Factsheet for GSMUA_Achr6P12670_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P02780_001	Banana	plastid	89.25	85.86
GSMUA_Achr10P...	Banana	plastid	86.74	84.03
AT4G10340.1	Thale cress	plastid	82.44	82.14
CDX90755	Canola	plastid	82.08	81.79
CDY60092	Canola	plastid	82.08	81.49
Bra000708.1-P	Field mustard	plastid	81.72	81.43
Os11t0242800-01	Rice	plastid	82.44	81.27
KRH34336	Soybean	plastid	83.51	81.18
KRG92462	Soybean	nucleus, plastid	83.51	80.9
CDY05098	Canola	plastid	81.0	80.71
Solyc06g063370.2.1	Tomato	plastid	82.44	80.42
PGSC0003DMT400068129	Potato	plastid	81.72	80.0
KRH09238	Soybean	mitochondrion, nucleus, plastid	82.8	79.93
Zm00001d048998_P001	Maize	plastid	81.0	79.86
Zm00001d007267_P002	Maize	plastid	81.0	79.86
EES09551	Sorghum	plastid	80.65	79.79
KRH38736	Soybean	nucleus, plastid	82.8	79.38
Bra037913.1-P	Field mustard	plastid	79.93	79.36
TraesCS4D01G086400.1	Wheat	plastid	78.85	76.92
TraesCS4B01G089500.1	Wheat	mitochondrion, plastid	78.85	76.92
TraesCS4A01G226900.2	Wheat	mitochondrion, plastid	78.85	76.39
CDX86864	Canola	plastid	56.99	76.08
HORVU4Hr1G015260.2	Barley	plastid	70.61	68.4
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	84.59	58.71
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	21.51	45.11
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	21.51	45.11
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	41.22	43.07
GSMUA_Achr4P33040_001	Banana	plastid, unclear	40.5	42.8
GSMUA_AchrUn_...	Banana	plastid	33.69	40.69
GSMUA_Achr1P08770_001	Banana	plastid, unclear	33.69	39.0
GSMUA_Achr4P07890_001	Banana	plastid	21.86	38.36
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	19.0	36.3
GSMUA_Achr6P20660_001	Banana	mitochondrion	25.81	35.12
GSMUA_Achr8P03720_001	Banana	plasma membrane, plastid, unclear	30.82	35.1
GSMUA_Achr9P02810_001	Banana	plastid	30.47	34.98
GSMUA_Achr6P31940_001	Banana	plastid	29.03	33.61
GSMUA_Achr3P04110_001	Banana	plastid	32.62	33.21
GSMUA_Achr2P06350_001	Banana	unclear	28.32	32.78
GSMUA_Achr2P14960_001	Banana	plastid	29.39	32.67
GSMUA_Achr9P27480_001	Banana	mitochondrion	36.56	31.68
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	10.75	31.58
GSMUA_Achr4P24090_001	Banana	unclear	28.32	31.35
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	26.52	29.72
GSMUA_Achr9P18200_001	Banana	plastid	14.34	29.2
GSMUA_Achr7P13020_001	Banana	plastid	28.32	29.04
GSMUA_Achr10P...	Banana	unclear	13.26	24.83

Protein Annotations

MapMan:1.1.1.1.3	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G12670_001
EnsemblPlants:GSMUA_Achr6P12670_001	EnsemblPlants:GSMUA_Achr6T12670_001	InterPro:IPR023329	UniProt:M0T6G5	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF53	SUPFAM:SSF103511	UniParc:UPI000295A7A0	SEG:seg	:	:

Description

Chlorophyll a-b binding protein CP26, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G12670_001]

Coordinates

chr6:+:8458613..8460251

Molecular Weight (calculated)

29923.1 Da

IEP (calculated)

5.793

GRAVY (calculated)

-0.018

Length

279 amino acids

Sequence
(BLAST)

001: MASLGVSEIL GTRLSTAAPP RSPPAPPPSG SPRIVALFSK KSSPKSKPAA VSPVNDELAK WYGPERRIFL PEGLLDRSEI PEYLTGDVPG DYGYDPFGLS
101: KKPENFAKYQ AYELIHARWA MLGAAGFIIP EAFNKFGANC GPEAVWFKTG ALLLDGNTLN YFGKNIPINL VVAVVAEIVL VGGAEYYRII NGLDLEDKLH
201: PGGPFDPLGL ANDPDQAALL KVKEIKNGRL AMFAMLGFFL QAYVTGEGPV ENLAKHLSDP FGNNLLTVIS GAAERAPTL

Best Arabidopsis Sequence Match ( AT4G10340.1 )
(BLAST)

001: MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL

Arabidopsis Description

LHCB5Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UW55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.