Factsheet for PGSC0003DMT400068129

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g063370.2.1	Tomato	plastid	98.95	98.6
AT4G10340.1	Thale cress	plastid	81.4	82.86
CDX90755	Canola	plastid	81.4	82.86
CDY05098	Canola	plastid	81.4	82.86
CDY60092	Canola	plastid	81.4	82.56
Bra037913.1-P	Field mustard	plastid	81.05	82.21
Bra000708.1-P	Field mustard	plastid	80.7	82.14
GSMUA_Achr3P02780_001	Banana	plastid	83.16	81.72
GSMUA_Achr6P12670_001	Banana	plasma membrane	80.0	81.72
CDX86864	Canola	plastid	59.3	80.86
GSMUA_Achr10P...	Banana	plastid	79.65	78.82
Os11t0242800-01	Rice	plastid	78.25	78.8
Zm00001d007267_P002	Maize	plastid	77.19	77.74
EES09551	Sorghum	plastid	76.84	77.66
TraesCS4D01G086400.1	Wheat	plastid	77.54	77.27
TraesCS4B01G089500.1	Wheat	mitochondrion, plastid	77.54	77.27
Zm00001d048998_P001	Maize	plastid	76.49	77.03
TraesCS4A01G226900.2	Wheat	mitochondrion, plastid	77.54	76.74
HORVU4Hr1G015260.2	Barley	plastid	68.77	68.06
VIT_18s0089g01170.t01	Wine grape	cytosol, extracellular, plastid	89.47	63.43
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	28.42	50.62
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	28.42	50.62
PGSC0003DMT400034897	Potato	plastid	44.21	48.09
PGSC0003DMT400034893	Potato	plastid	44.21	48.09
PGSC0003DMT400034892	Potato	plastid	44.21	48.09
PGSC0003DMT400021391	Potato	plastid	43.86	48.08
PGSC0003DMT400034896	Potato	plastid	44.91	47.94
PGSC0003DMT400034898	Potato	plastid	43.86	47.71
PGSC0003DMT400021392	Potato	plastid	43.16	47.31
PGSC0003DMT400034899	Potato	plastid	44.21	47.19
PGSC0003DMT400043054	Potato	plastid	44.21	47.19
PGSC0003DMT400021389	Potato	plastid	43.86	47.17
PGSC0003DMT400092927	Potato	plastid	43.86	47.17
PGSC0003DMT400021422	Potato	plastid	43.86	47.17
PGSC0003DMT400021390	Potato	plastid	42.81	46.92
PGSC0003DMT400034894	Potato	plastid	31.58	46.15
PGSC0003DMT400022072	Potato	plastid	41.75	44.91
PGSC0003DMT400049550	Potato	plastid	41.05	44.66
KRH58809	Soybean	mitochondrion	49.47	44.48
PGSC0003DMT400034902	Potato	plastid	20.35	44.27
PGSC0003DMT400010985	Potato	plastid	40.0	43.02
PGSC0003DMT400015740	Potato	plastid	40.0	43.02
PGSC0003DMT400022698	Potato	plastid	44.21	41.31
PGSC0003DMT400019031	Potato	plastid	45.61	39.63
PGSC0003DMT400037285	Potato	extracellular, vacuole	20.35	37.18
PGSC0003DMT400059995	Potato	plastid	30.18	34.96
PGSC0003DMT400054836	Potato	plastid	33.33	34.8
PGSC0003DMT400060313	Potato	plastid	29.82	34.55
PGSC0003DMT400007514	Potato	plastid	31.23	34.23
PGSC0003DMT400020100	Potato	plastid	32.63	34.07
PGSC0003DMT400025715	Potato	plastid	37.54	33.65
PGSC0003DMT400083158	Potato	plastid	29.47	33.6
PGSC0003DMT400050232	Potato	plastid	28.42	32.27
PGSC0003DMT400021871	Potato	plastid	30.53	30.53
PGSC0003DMT400032791	Potato	plastid	24.56	27.34
PGSC0003DMT400032790	Potato	plastid	23.51	26.17
PGSC0003DMT400011381	Potato	plastid	22.46	24.06

Protein Annotations

MapMan:1.1.1.1.3	Gene3D:1.10.3460.10	EntrezGene:102584316	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
InterPro:IPR023329	UniProt:M1CIH8	PFAM:PF00504	EnsemblPlantsGene:PGSC0003DMG400026500	PGSC:PGSC0003DMG400026500	EnsemblPlants:PGSC0003DMT400068129
PANTHER:PTHR21649	PANTHER:PTHR21649:SF53	SUPFAM:SSF103511	UniParc:UPI0002948453	RefSeq:XP_006357455.1	SEG:seg

Description

Type I (26 kD) CP29 polypeptide [Source:PGSC_GENE;Acc:PGSC0003DMG400026500]

Coordinates

chr6:+:48020310..48022190

Molecular Weight (calculated)

30412.7 Da

IEP (calculated)

6.291

GRAVY (calculated)

0.072

Length

285 amino acids

Sequence
(BLAST)

001: MAAATSLYVS EMLGSPVKFS GVARPAAPSP SSSATFKTVA LFKKKAAAPA KAKAAAVSPA DDELAKWYGP DRRIFLPDGL LDRSEIPEYL NGEVPGDYGY
101: DPFGLSKKPE DFAKYQAYEL IHARWAMLGA AGFIIPEAFN KFGANCGPEA VWFKTGALLL DGNTLSYFGK NIPINLILAV VAEVVLVGGA EYYRIINGLD
201: LEDKLHPGGP FDPLGLAKDP DQAAILKVKE IKNGRLAMFS MLGFFIQAYV TGKGPVENLA AHLSDPFGNN LLTVIGGASE RVPTL

Best Arabidopsis Sequence Match ( AT4G10340.1 )
(BLAST)

001: MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL

Arabidopsis Description

LHCB5Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178UW55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.