Factsheet for PGSC0003DMT400083158

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g069730.2.1	Tomato	plastid	98.0	98.0
PGSC0003DMT400050232	Potato	plastid	89.2	88.84
Bra018144.1-P	Field mustard	plastid	86.4	85.71
CDX99044	Canola	plastid	86.4	85.71
CDY47410	Canola	plastid	86.4	85.71
VIT_17s0000g06350.t01	Wine grape	plastid	86.4	85.71
AT3G47470.1	Thale cress	plastid	84.4	84.06
KRH54568	Soybean	nucleus, plastid	83.6	82.94
GSMUA_Achr2P14960_001	Banana	plastid	82.8	82.47
KRH63318	Soybean	plastid	82.8	82.14
GSMUA_Achr4P24090_001	Banana	unclear	82.0	81.35
Zm00001d032197_P001	Maize	plastid	78.8	79.76
Zm00001d050403_P001	Maize	plastid	77.6	79.51
KXG25214	Sorghum	plastid	78.4	78.09
Os08t0435900-01	Rice	mitochondrion	76.0	77.87
HORVU5Hr1G066280.1	Barley	plastid	73.2	74.69
TraesCS5A01G229300.1	Wheat	mitochondrion, plastid	73.2	74.69
TraesCS5B01G227900.1	Wheat	plastid	73.2	74.69
TraesCS5D01G238300.1	Wheat	mitochondrion, plastid	72.8	74.29
PGSC0003DMT400037285	Potato	extracellular, vacuole	31.2	50.0
PGSC0003DMT400007514	Potato	plastid	45.2	43.46
PGSC0003DMT400059995	Potato	plastid	36.8	37.4
PGSC0003DMT400054836	Potato	plastid	40.4	37.0
PGSC0003DMT400020100	Potato	plastid	40.4	37.0
PGSC0003DMT400060313	Potato	plastid	36.4	36.99
PGSC0003DMT400035007	Potato	cytosol, extracellular, vacuole	22.0	34.38
PGSC0003DMT400035006	Potato	cytosol, extracellular, vacuole	22.0	34.38
PGSC0003DMT400032791	Potato	plastid	34.0	33.2
PGSC0003DMT400011381	Potato	plastid	35.2	33.08
PGSC0003DMT400021391	Potato	plastid	34.4	33.08
PGSC0003DMT400021422	Potato	plastid	34.8	32.83
PGSC0003DMT400021392	Potato	plastid	34.0	32.69
PGSC0003DMT400034896	Potato	plastid	34.8	32.58
PGSC0003DMT400092927	Potato	plastid	34.4	32.45
PGSC0003DMT400021389	Potato	plastid	34.4	32.45
PGSC0003DMT400021390	Potato	plastid	33.6	32.31
PGSC0003DMT400021871	Potato	plastid	36.8	32.28
PGSC0003DMT400032790	Potato	plastid	32.8	32.03
PGSC0003DMT400043054	Potato	plastid	34.0	31.84
PGSC0003DMT400034898	Potato	plastid	33.2	31.68
PGSC0003DMT400034897	Potato	plastid	33.2	31.68
PGSC0003DMT400034899	Potato	plastid	33.6	31.46
PGSC0003DMT400034893	Potato	plastid	32.8	31.3
PGSC0003DMT400034892	Potato	plastid	32.8	31.3
PGSC0003DMT400022072	Potato	plastid	32.4	30.57
PGSC0003DMT400049550	Potato	plastid	32.0	30.53
PGSC0003DMT400034894	Potato	plastid	23.6	30.26
PGSC0003DMT400010985	Potato	plastid	31.6	29.81
PGSC0003DMT400068129	Potato	plastid	33.6	29.47
PGSC0003DMT400015740	Potato	plastid	31.2	29.43
PGSC0003DMT400022698	Potato	plastid	34.8	28.52
PGSC0003DMT400034902	Potato	plastid	14.4	27.48
PGSC0003DMT400025715	Potato	plastid	34.0	26.73
PGSC0003DMT400019031	Potato	plastid	33.6	25.61

Protein Annotations

MapMan:1.1.4.1.4	Gene3D:1.10.3460.10	EntrezGene:102583646	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
InterPro:IPR023329	UniProt:M1D6L8	PFAM:PF00504	EnsemblPlantsGene:PGSC0003DMG400033084	PGSC:PGSC0003DMG400033084	EnsemblPlants:PGSC0003DMT400083158
PANTHER:PTHR21649	PANTHER:PTHR21649:SF4	SUPFAM:SSF103511	TMHMM:TMhelix	UniParc:UPI0002964A3B	RefSeq:XP_006354774.1

Description

Chlorophyll a/b-binding protein (cab-12) [Source:PGSC_GENE;Acc:PGSC0003DMG400033084]

Coordinates

chr6:+:51580862..51582072

Molecular Weight (calculated)

27601.9 Da

IEP (calculated)

6.974

GRAVY (calculated)

-0.103

Length

250 amino acids

Sequence
(BLAST)

001: MATVTTQASA AVFRPSATKT RFLSGSSGKL NRDVSFKSST LSYNSFKIEA KKGEWLPGLT SPTYLNGSLA GDNGFDPLGL AEDPENLRWF VQAELVNGRW
101: AMLGVAGMLL PEVFTSIGLL NVPKWFDAGK SDYFASSSTL FVIEFILFHY VEIRRWQDIK NPGSVNQDPI FKSYSLPPNE VGYPGGIFNP LNFAPTLEAK
201: EKEIANGRLA MLAFLGFIVQ HNVTGKGPFD NLLQHISDPW HNTIIQTFSN

Best Arabidopsis Sequence Match ( AT3G47470.1 )
(BLAST)

001: MATVTTHASA SIFRPCTSKP RFLTGSSGRL NRDLSFTSIG SSAKTSSFKV EAKKGEWLPG LASPDYLTGS LAGDNGFDPL GLAEDPENLK WFVQAELVNG
101: RWAMLGVAGM LLPEVFTKIG IINVPEWYDA GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK GEVGYPGGIF NPLNFAPTQE
201: AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD PWHNTIVQTF N

Arabidopsis Description

LHCA4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VEE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.