Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99044 | Canola | plastid | 95.22 | 94.84 |
| Bra018144.1-P | Field mustard | plastid | 95.22 | 94.84 |
| CDY47410 | Canola | plastid | 95.22 | 94.84 |
| PGSC0003DMT400050232 | Potato | plastid | 84.86 | 84.86 |
| Solyc03g115900.2.1 | Tomato | plastid | 84.86 | 84.86 |
| Solyc06g069730.2.1 | Tomato | plastid | 84.46 | 84.8 |
| PGSC0003DMT400083158 | Potato | plastid | 84.06 | 84.4 |
| VIT_17s0000g06350.t01 | Wine grape | plastid | 84.46 | 84.13 |
| KRH54568 | Soybean | nucleus, plastid | 84.06 | 83.73 |
| KRH63318 | Soybean | plastid | 83.67 | 83.33 |
| GSMUA_Achr4P24090_001 | Banana | unclear | 83.27 | 82.94 |
| GSMUA_Achr2P14960_001 | Banana | plastid | 82.87 | 82.87 |
| Zm00001d032197_P001 | Maize | plastid | 76.49 | 77.73 |
| Zm00001d050403_P001 | Maize | plastid | 75.3 | 77.46 |
| KXG25214 | Sorghum | plastid | 76.1 | 76.1 |
| Os08t0435900-01 | Rice | mitochondrion | 73.71 | 75.82 |
| HORVU5Hr1G066280.1 | Barley | plastid | 73.71 | 75.51 |
| TraesCS5A01G229300.1 | Wheat | mitochondrion, plastid | 73.71 | 75.51 |
| TraesCS5B01G227900.1 | Wheat | plastid | 73.71 | 75.51 |
| TraesCS5D01G238300.1 | Wheat | mitochondrion, plastid | 73.31 | 75.1 |
| AT3G61470.1 | Thale cress | plastid | 47.41 | 46.3 |
| AT1G45474.2 | Thale cress | mitochondrion | 43.82 | 42.97 |
| AT1G19150.1 | Thale cress | plastid | 42.23 | 39.26 |
| AT3G54890.1 | Thale cress | plastid | 36.26 | 37.76 |
| AT5G28450.1 | Thale cress | plastid | 25.5 | 36.99 |
| AT1G61520.1 | Thale cress | plastid | 39.84 | 36.63 |
| AT1G29910.1 | Thale cress | plastid | 34.66 | 32.58 |
| AT1G29920.1 | Thale cress | plastid | 34.66 | 32.58 |
| AT1G29930.1 | Thale cress | plastid | 34.66 | 32.58 |
| AT2G34420.1 | Thale cress | plastid | 34.26 | 32.45 |
| AT5G01530.1 | Thale cress | plastid | 37.05 | 32.07 |
| AT2G34430.1 | Thale cress | plastid | 33.86 | 31.95 |
| AT5G54270.1 | Thale cress | plastid | 33.07 | 31.32 |
| AT2G05070.1 | Thale cress | plastid | 33.07 | 31.32 |
| AT3G08940.2 | Thale cress | plastid | 35.46 | 31.01 |
| AT2G40100.1 | Thale cress | plastid | 33.07 | 30.07 |
| AT4G10340.1 | Thale cress | plastid | 32.67 | 29.29 |
| AT1G15820.1 | Thale cress | plastid | 29.48 | 28.68 |
| AT3G27690.2 | Thale cress | golgi, plastid | 33.07 | 27.85 |
| AT1G76570.1 | Thale cress | plastid | 31.47 | 24.16 |
| AT2G05100.2 | Thale cress | plastid | 29.88 | 23.66 |
Protein Annotations
| MapMan:1.1.4.1.4 | Gene3D:1.10.3460.10 | EntrezGene:823901 | UniProt:A0A178VEE6 | ProteinID:AEE78285.1 | ArrayExpress:AT3G47470 |
| EnsemblPlantsGene:AT3G47470 | RefSeq:AT3G47470 | TAIR:AT3G47470 | RefSeq:AT3G47470-TAIR-G | EnsemblPlants:AT3G47470.1 | TAIR:AT3G47470.1 |
| EMBL:AY086470 | EMBL:AY093080 | Unigene:At.35803 | EMBL:BT000093 | ProteinID:CAB61973.1 | InterPro:Chloro_AB-bd_pln |
| InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009409 | GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 |
| GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009644 |
| GO:GO:0009645 | GO:GO:0009765 | GO:GO:0009768 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010287 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 |
| GO:GO:0019904 | GO:GO:0031409 | GO:GO:0046872 | GO:GO:0080167 | InterPro:IPR023329 | Symbol:LHCA4 |
| EMBL:M63931 | RefSeq:NP_190331.3 | ProteinID:OAP04827.1 | UniProt:P27521 | PFAM:PF00504 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0006339 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF4 | SUPFAM:SSF103511 | UniParc:UPI0000001174 | : |
Description
LHCA4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VEE6]
Coordinates
chr3:-:17493343..17495033
Molecular Weight (calculated)
27735.0 Da
IEP (calculated)
6.685
GRAVY (calculated)
-0.156
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVTTHASA SIFRPCTSKP RFLTGSSGRL NRDLSFTSIG SSAKTSSFKV EAKKGEWLPG LASPDYLTGS LAGDNGFDPL GLAEDPENLK WFVQAELVNG
101: RWAMLGVAGM LLPEVFTKIG IINVPEWYDA GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK GEVGYPGGIF NPLNFAPTQE
201: AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD PWHNTIVQTF N
101: RWAMLGVAGM LLPEVFTKIG IINVPEWYDA GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK GEVGYPGGIF NPLNFAPTQE
201: AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD PWHNTIVQTF N
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.