Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12903 | Canola | plastid | 93.77 | 94.46 |
| Bra027083.1-P | Field mustard | plastid | 93.77 | 94.46 |
| CDY57375 | Canola | plastid | 93.41 | 94.1 |
| CDY15020 | Canola | plastid | 93.41 | 94.1 |
| CDY47581 | Canola | plastid | 93.41 | 93.41 |
| CDY03835 | Canola | plastid | 93.41 | 93.41 |
| Bra031427.1-P | Field mustard | plastid | 93.04 | 93.04 |
| CDY26347 | Canola | plastid | 83.15 | 89.02 |
| PGSC0003DMT400020100 | Potato | plastid | 87.55 | 87.55 |
| Solyc12g011280.1.1 | Tomato | plastid | 86.81 | 86.81 |
| VIT_15s0024g00040.t01 | Wine grape | plastid | 86.81 | 86.5 |
| Solyc10g007690.2.1 | Tomato | plastid | 86.08 | 86.08 |
| PGSC0003DMT400054836 | Potato | plastid | 85.71 | 85.71 |
| KRH74072 | Soybean | mitochondrion, nucleus, plastid | 85.71 | 84.78 |
| KRH14048 | Soybean | nucleus, plastid | 85.35 | 84.42 |
| Zm00001d046786_P001 | Maize | plastid | 80.59 | 82.4 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, plastid | 28.57 | 82.11 |
| KXG20345 | Sorghum | plastid | 79.49 | 81.89 |
| Os02t0197600-01 | Rice | plastid | 75.46 | 76.58 |
| Bra038584.1-P | Field mustard | plastid | 80.22 | 76.31 |
| TraesCS6A01G159800.1 | Wheat | plastid | 74.36 | 75.46 |
| TraesCS6B01G191500.1 | Wheat | plastid | 74.36 | 75.46 |
| TraesCS6D01G152700.1 | Wheat | golgi | 74.36 | 75.46 |
| AT3G61470.1 | Thale cress | plastid | 38.1 | 40.47 |
| AT3G47470.1 | Thale cress | plastid | 36.63 | 39.84 |
| AT1G45474.2 | Thale cress | mitochondrion | 35.53 | 37.89 |
| AT1G19150.1 | Thale cress | plastid | 37.0 | 37.41 |
| AT3G54890.1 | Thale cress | plastid | 30.04 | 34.02 |
| AT2G34430.1 | Thale cress | plastid | 32.97 | 33.83 |
| AT1G29910.1 | Thale cress | plastid | 32.6 | 33.33 |
| AT1G29920.1 | Thale cress | plastid | 32.6 | 33.33 |
| AT1G29930.1 | Thale cress | plastid | 32.6 | 33.33 |
| AT4G10340.1 | Thale cress | plastid | 34.07 | 33.21 |
| AT5G54270.1 | Thale cress | plastid | 32.23 | 33.21 |
| AT5G28450.1 | Thale cress | plastid | 20.88 | 32.95 |
| AT2G34420.1 | Thale cress | plastid | 31.87 | 32.83 |
| AT2G05070.1 | Thale cress | plastid | 31.5 | 32.45 |
| AT3G08940.2 | Thale cress | plastid | 30.77 | 29.27 |
| AT5G01530.1 | Thale cress | plastid | 30.77 | 28.97 |
| AT3G27690.2 | Thale cress | golgi, plastid | 31.5 | 28.86 |
| AT1G15820.1 | Thale cress | plastid | 27.11 | 28.68 |
| AT2G40100.1 | Thale cress | plastid | 27.47 | 27.17 |
| AT1G76570.1 | Thale cress | plastid | 30.4 | 25.38 |
| AT2G05100.2 | Thale cress | plastid | 27.84 | 23.97 |
Protein Annotations
| MapMan:1.1.4.1.3 | Gene3D:1.10.3460.10 | PDB:2O01 | EntrezGene:842446 | UniProt:A0A178W5Y6 | ProteinID:AAD25555.1 |
| ProteinID:AEE33846.1 | ProteinID:AEE33847.1 | ProteinID:AEE33848.1 | EMBL:AK228436 | ArrayExpress:AT1G61520 | EnsemblPlantsGene:AT1G61520 |
| RefSeq:AT1G61520 | TAIR:AT1G61520 | RefSeq:AT1G61520-TAIR-G | EnsemblPlants:AT1G61520.1 | TAIR:AT1G61520.1 | EMBL:AY059879 |
| EMBL:AY086439 | EMBL:AY093370 | Unigene:At.20472 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009409 | GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009534 | GO:GO:0009535 |
| GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009644 | GO:GO:0009645 | GO:GO:0009719 |
| GO:GO:0009735 | GO:GO:0009765 | GO:GO:0009768 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010287 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 |
| GO:GO:0019904 | GO:GO:0031409 | GO:GO:0046872 | InterPro:IPR023329 | Symbol:LHCA3 | RefSeq:NP_001031217.1 |
| RefSeq:NP_001185280.1 | RefSeq:NP_176347.1 | ProteinID:OAP12512.1 | PFAM:PF00504 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0006339 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF14 | UniProt:Q9SY97 | SUPFAM:SSF103511 | EMBL:U01103 |
| UniParc:UPI00000AB743 | SEG:seg | : | : | : | : |
Description
LHCA3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y6]
Coordinates
chr1:+:22699893..22701412
Molecular Weight (calculated)
29183.1 Da
IEP (calculated)
9.085
GRAVY (calculated)
-0.014
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.