Factsheet for Zm00001d046786_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 19688749
plastid: 20089766
plastid: 21196305
plastid: 22065420
extracellular: 22192489
plastid: 23198870

msms PMID: 19688749 doi

C Zörb, R Herbst, C Forreiter, S Schubert

Institute of Plant Nutrition (IFZ), Justus Liebig University Giessen, Giessen, Germany. czoerb@plantnutrition.uni-kiel.de

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 21196305

XY Liu, YD Wu, ZY Shen, Z Shen, HH Li, XM Yu, XF Yan, CH Guo, BC Wang

Key Laboratory of Forest Tree Genetic Improvement and Biotechnology, Ministry of Education, Northeast Forestry University, Harbin, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20345	Sorghum	plastid	95.88	96.6
GSMUA_Achr3P04110_001	Banana	plastid	85.77	83.58
Os02t0197600-01	Rice	plastid	83.15	82.53
TraesCS6A01G159800.1	Wheat	plastid	82.77	82.16
TraesCS6D01G152700.1	Wheat	golgi	82.77	82.16
PGSC0003DMT400054836	Potato	plastid	83.9	82.05
TraesCS6B01G191500.1	Wheat	plastid	82.4	81.78
VIT_15s0024g00040.t01	Wine grape	plastid	83.9	81.75
PGSC0003DMT400020100	Potato	plastid	83.15	81.32
Solyc10g007690.2.1	Tomato	plastid	83.15	81.32
Solyc12g011280.1.1	Tomato	plastid	83.15	81.32
CDY12903	Canola	plastid	82.02	80.81
Bra027083.1-P	Field mustard	plastid	82.02	80.81
AT1G61520.1	Thale cress	plastid	82.4	80.59
CDY57375	Canola	plastid	81.65	80.44
CDY26347	Canola	plastid	76.78	80.39
CDY47581	Canola	plastid	82.02	80.22
CDY03835	Canola	plastid	82.02	80.22
Bra031427.1-P	Field mustard	plastid	82.02	80.22
CDY15020	Canola	plastid	81.27	80.07
KRH74072	Soybean	mitochondrion, nucleus, plastid	81.27	78.62
KRH14048	Soybean	nucleus, plastid	81.27	78.62
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	27.34	76.84
Bra038584.1-P	Field mustard	plastid	74.53	69.34
Zm00001d032197_P001	Maize	plastid	37.83	40.89
Zm00001d050403_P001	Maize	plastid	37.08	40.57
Zm00001d018157_P001	Maize	plastid	38.95	38.66
Zm00001d005814_P002	Maize	plastid	38.2	37.64
Zm00001d006663_P001	Maize	plastid	36.33	37.31
Zm00001d021906_P001	Maize	plastid	36.7	36.3
Zm00001d011285_P001	Maize	plastid	34.46	34.85
Zm00001d044402_P001	Maize	plastid	34.08	34.47
Zm00001d044401_P001	Maize	plastid	34.08	34.47
Zm00001d044399_P001	Maize	plastid	34.08	34.47
Zm00001d044396_P001	Maize	plastid	34.08	34.47
Zm00001d032051_P001	Maize	mitochondrion	11.61	34.44
Zm00001d021435_P001	Maize	plastid	33.33	33.97
Zm00001d009589_P001	Maize	plastid	33.71	33.96
Zm00001d039040_P001	Maize	plastid	33.71	33.83
Zm00001d015385_P001	Maize	plastid	30.71	33.47
Zm00001d021784_P001	Maize	plastid	33.33	33.09
Zm00001d033136_P001	Maize	plastid	32.21	33.08
Zm00001d033132_P001	Maize	plastid	32.21	33.08
Zm00001d007267_P002	Maize	plastid	32.96	31.1
Zm00001d048998_P001	Maize	plastid	32.96	31.1
Zm00001d026599_P001	Maize	plastid	28.09	30.24
Zm00001d001857_P001	Maize	plastid	28.09	29.64
Zm00001d013766_P001	Maize	plastid	15.36	28.47
Zm00001d006592_P001	Maize	plastid	13.11	28.46
Zm00001d020002_P002	Maize	plastid	31.84	26.98
Zm00001d021763_P001	Maize	plastid	29.21	26.8
Zm00001d006587_P001	Maize	plastid	28.84	26.46
Zm00001d011218_P001	Maize	plastid	14.23	23.17
Zm00001d040012_P001	Maize	plastid	11.61	22.79
Zm00001d024372_P001	Maize	plastid	20.22	22.78

Protein Annotations

MapMan:1.1.4.1.3	Gene3D:1.10.3460.10	EntrezGene:100282214	ProteinID:AQL05020.1	UniProt:B6SUC4	EMBL:BT087660
InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	EMBL:EU956339	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF14	SUPFAM:SSF103511	UniParc:UPI000182AFEC	EnsemblPlantsGene:Zm00001d046786	EnsemblPlants:Zm00001d046786_P001
EnsemblPlants:Zm00001d046786_T001	SEG:seg	:	:	:	:

Description

Photosystem I chlorophyll a/b-binding protein 3-1 chloroplastic

Coordinates

chr9:-:105955854..105957260

Molecular Weight (calculated)

28986.0 Da

IEP (calculated)

9.352

GRAVY (calculated)

-0.081

Length

267 amino acids

Sequence
(BLAST)

001: MAAQALLSGR QLLGRPVQSA VSRSSARKAP FVVRASSSPP AKQGADRQLW FASKQSLSYL DGTLPGDYGF DPLGLSDPEG TGGFIEPKWL AYGEVINGRY
101: AMLGAVGAIA PEIFGKMGII PPETALPWFK TGVIPPAGTY NYWADSYTLF VFNMALMGFA EHRRLQDWYN PGSMGKQYFL GLEKFLAGSG DPSYPGGPLF
201: NPLGFGKTEK EMNELKLKEI KNGRLAMLAI LGYFIQGLVT GVGPFQNLLD HLADPVNNNV LTSLKFH

Best Arabidopsis Sequence Match ( AT1G61520.1 )
(BLAST)

001: MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH

Arabidopsis Description

LHCA3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.