Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032051_P001 | Maize | mitochondrion | 47.06 | 71.11 |
| Zm00001d011218_P001 | Maize | plastid | 52.94 | 43.9 |
| Zm00001d001857_P001 | Maize | plastid | 58.09 | 31.23 |
| Zm00001d026599_P001 | Maize | plastid | 52.94 | 29.03 |
| Os04t0457000-01 | Rice | extracellular, plasma membrane, plastid | 52.94 | 28.57 |
| Solyc01g105030.2.1 | Tomato | plastid | 48.53 | 25.78 |
| Bra026099.1-P | Field mustard | plastid | 47.79 | 25.19 |
| PGSC0003DMT400032791 | Potato | plastid | 47.06 | 25.0 |
| Solyc01g105050.2.1 | Tomato | plastid | 47.06 | 25.0 |
| Bra026745.1-P | Field mustard | plastid | 47.06 | 24.71 |
| KRH10515 | Soybean | mitochondrion, nucleus, plastid | 47.06 | 24.62 |
| PGSC0003DMT400032790 | Potato | plastid | 46.32 | 24.61 |
| KRH43915 | Soybean | mitochondrion, nucleus, plastid | 47.06 | 24.52 |
| VIT_12s0055g01110.t01 | Wine grape | plastid | 46.32 | 24.51 |
| AT1G15820.1 | Thale cress | plastid | 46.32 | 24.42 |
| Bra016650.1-P | Field mustard | plastid | 45.59 | 24.12 |
| Zm00001d006592_P001 | Maize | plastid | 20.59 | 22.76 |
| Zm00001d013766_P001 | Maize | plastid | 18.38 | 17.36 |
| Zm00001d050403_P001 | Maize | plastid | 30.15 | 16.8 |
| Zm00001d006663_P001 | Maize | plastid | 31.62 | 16.54 |
| Zm00001d021906_P001 | Maize | plastid | 32.35 | 16.3 |
| Zm00001d032197_P001 | Maize | plastid | 29.41 | 16.19 |
| Zm00001d005814_P002 | Maize | plastid | 30.88 | 15.5 |
| Zm00001d018157_P001 | Maize | plastid | 30.15 | 15.24 |
| Zm00001d011285_P001 | Maize | plastid | 24.26 | 12.5 |
| Zm00001d006587_P001 | Maize | plastid | 26.47 | 12.37 |
| Zm00001d021763_P001 | Maize | plastid | 26.47 | 12.37 |
| Zm00001d015385_P001 | Maize | plastid | 22.06 | 12.24 |
| Zm00001d044402_P001 | Maize | plastid | 23.53 | 12.12 |
| Zm00001d044396_P001 | Maize | plastid | 23.53 | 12.12 |
| Zm00001d044399_P001 | Maize | plastid | 23.53 | 12.12 |
| Zm00001d044401_P001 | Maize | plastid | 23.53 | 12.12 |
| Zm00001d021435_P001 | Maize | plastid | 22.79 | 11.83 |
| Zm00001d039040_P001 | Maize | plastid | 22.79 | 11.65 |
| Zm00001d046786_P001 | Maize | plastid | 22.79 | 11.61 |
| Zm00001d009589_P001 | Maize | plastid | 22.06 | 11.32 |
| Zm00001d021784_P001 | Maize | plastid | 19.85 | 10.04 |
| Zm00001d020002_P002 | Maize | plastid | 22.06 | 9.52 |
| Zm00001d033136_P001 | Maize | plastid | 17.65 | 9.23 |
| Zm00001d033132_P001 | Maize | plastid | 17.65 | 9.23 |
| Zm00001d048998_P001 | Maize | plastid | 19.12 | 9.19 |
| Zm00001d007267_P002 | Maize | plastid | 19.12 | 9.19 |
| Zm00001d024372_P001 | Maize | plastid | 12.5 | 7.17 |
Protein Annotations
| Gene3D:1.10.3460.10 | MapMan:35.1 | UniProt:A0A1D6MM67 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 |
| GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009765 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 |
| InterPro:IPR023329 | ProteinID:ONM30300.1 | PFAM:PF00504 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF2 | SUPFAM:SSF103511 |
| UniParc:UPI0002212CCB | EnsemblPlantsGene:Zm00001d040012 | EnsemblPlants:Zm00001d040012_P001 | EnsemblPlants:Zm00001d040012_T001 | SEG:seg | : |
Description
light harvesting complex photosystem II subunit 6
Coordinates
chr3:-:22904179..22904589
Molecular Weight (calculated)
14692.0 Da
IEP (calculated)
11.468
GRAVY (calculated)
-0.081
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MALASTSATA PAVVLKTRSS APGARSPMPS RPSPRHTLLA IAVAAAKKLW TRRVHQPALA RQIVSLCRDE EGGWSSKLAV TPPPRLCRLP GDFGFDPLGL
101: GKDPAFLKWY REAELIHGRW AMAAVLGIFM GQPRAE
101: GKDPAFLKWY REAELIHGRW AMAAVLGIFM GQPRAE
001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL
Arabidopsis Description
LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.