Factsheet for Bra016650.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96833	Canola	plastid	97.67	96.91
Bra026099.1-P	Field mustard	plastid	95.33	94.96
Bra026745.1-P	Field mustard	plastid	94.94	94.21
CDX83966	Canola	plastid	73.54	82.89
GSMUA_Achr10P...	Banana	unclear	47.86	82.55
Solyc01g105050.2.1	Tomato	plastid	80.16	80.47
PGSC0003DMT400032790	Potato	plastid	79.38	79.69
KRH10515	Soybean	mitochondrion, nucleus, plastid	80.54	79.62
KRH43915	Soybean	mitochondrion, nucleus, plastid	80.54	79.31
PGSC0003DMT400032791	Potato	plastid	78.6	78.91
VIT_12s0055g01110.t01	Wine grape	plastid	78.6	78.6
Solyc01g105030.2.1	Tomato	plastid	78.21	78.52
Zm00001d026599_P001	Maize	plastid	74.71	77.42
Zm00001d001857_P001	Maize	plastid	75.88	77.08
TraesCS2B01G340300.1	Wheat	plastid	75.88	76.47
TraesCS2A01G342600.1	Wheat	plastid	75.88	76.47
TraesCS2D01G320900.1	Wheat	plastid	75.88	76.47
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	74.71	76.19
OQU82564	Sorghum	plastid	75.49	76.08
Zm00001d032051_P001	Maize	mitochondrion	24.51	70.0
HORVU2Hr1G079920.1	Barley	cytosol, mitochondrion, plastid	71.21	62.46
HORVU2Hr1G079910.1	Barley	cytosol	41.25	52.22
Zm00001d040012_P001	Maize	plastid	24.12	45.59
Zm00001d011218_P001	Maize	plastid	27.24	42.68
Bra003198.1-P	Field mustard	plastid	32.3	34.44
Bra007109.1-P	Field mustard	plastid	31.91	34.02
Bra016522.1-P	Field mustard	plastid	34.63	33.46
Bra003451.1-P	Field mustard	plastid	33.46	33.2
Bra014433.1-P	Field mustard	plastid	33.07	33.2
Bra014048.1-P	Field mustard	mitochondrion, plastid	32.68	32.56
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	19.07	30.43
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	19.07	30.43
Bra002999.1-P	Field mustard	plastid	30.35	29.43
Bra004989.1-P	Field mustard	plastid	31.52	29.35
Bra030181.1-P	Field mustard	plastid	30.35	29.21
Bra010807.1-P	Field mustard	plastid	30.35	29.21
Bra018144.1-P	Field mustard	plastid	28.4	28.97
Bra030182.1-P	Field mustard	plastid	29.96	28.84
Bra029732.1-P	Field mustard	plastid	32.3	28.82
Bra028906.1-P	Field mustard	plastid	32.3	28.82
Bra022976.1-P	Field mustard	plastid	29.18	28.2
Bra005425.1-P	Field mustard	plastid	29.18	28.2
Bra031427.1-P	Field mustard	plastid	28.79	27.11
Bra033022.1-P	Field mustard	plastid	26.85	26.74
Bra027083.1-P	Field mustard	plastid	28.02	26.57
Bra039070.1-P	Field mustard	plastid	27.24	26.42
Bra013183.1-P	Field mustard	plastid	27.24	26.42
Bra025297.1-P	Field mustard	plastid	27.24	26.32
Bra000708.1-P	Field mustard	plastid	26.85	24.64
Bra038584.1-P	Field mustard	plastid	27.24	24.39
Bra037913.1-P	Field mustard	plastid	26.07	23.84
Bra008265.1-P	Field mustard	plastid	28.02	22.22

Protein Annotations

MapMan:1.1.1.1.4	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra016650	EnsemblPlants:Bra016650.1	EnsemblPlants:Bra016650.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	UniProt:M4DJH2	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF2	SUPFAM:SSF103511	UniParc:UPI000254589E	SEG:seg	:	:

Description

AT1G15820 (E=1e-125) LHCB6, CP24 | LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6); chlorophyll binding

Coordinates

chrA08:+:19423418..19424417

Molecular Weight (calculated)

27371.8 Da

IEP (calculated)

9.611

GRAVY (calculated)

0.006

Length

257 amino acids

Sequence
(BLAST)

001: MAVSGAVLSG LGPSFLSGSK KSAAALGSGV GSTAARVGRK TLIVAAAAAS QPKKSWIPAV KGGGNFLDPE WLDGSLPGDF GFDPLGLGKD PAFLKWYREA
101: ELIHGRWAMA AVLGIFVGQA WSGVPWFEAG ADPRAIAPFS FGSLLGTQLL LMGWVESKRW VDFFNPDSQS VEWATPWSRT AENFANYTGD QGYPGGRFFD
201: PLGLAGKTRG GVYEPDREKL ERLKVAEIKH SRLAMLAMLV FYFEAGQGKT PLGALGL

Best Arabidopsis Sequence Match ( AT1G15820.1 )
(BLAST)

001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL

Arabidopsis Description

LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.