Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0457000-01 | Rice | extracellular, plasma membrane, plastid | 52.22 | 42.06 |
| OQU82564 | Sorghum | plastid | 52.22 | 41.57 |
| Bra016650.1-P | Field mustard | plastid | 52.22 | 41.25 |
| Bra026099.1-P | Field mustard | plastid | 52.22 | 41.09 |
| GSMUA_Achr10P... | Banana | unclear | 30.05 | 40.94 |
| Bra026745.1-P | Field mustard | plastid | 52.22 | 40.93 |
| AT1G15820.1 | Thale cress | plastid | 51.72 | 40.7 |
| VIT_12s0055g01110.t01 | Wine grape | plastid | 50.74 | 40.08 |
| KRH10515 | Soybean | mitochondrion, nucleus, plastid | 50.74 | 39.62 |
| KRH43915 | Soybean | mitochondrion, nucleus, plastid | 50.74 | 39.46 |
| Solyc01g105050.2.1 | Tomato | plastid | 49.75 | 39.45 |
| Solyc01g105030.2.1 | Tomato | plastid | 49.75 | 39.45 |
| PGSC0003DMT400032791 | Potato | plastid | 49.75 | 39.45 |
| PGSC0003DMT400032790 | Potato | plastid | 49.26 | 39.06 |
| HORVU2Hr1G079920.1 | Barley | cytosol, mitochondrion, plastid | 55.17 | 38.23 |
| Zm00001d011218_P001 | Maize | plastid | 24.14 | 29.88 |
| HORVU5Hr1G062240.1 | Barley | plastid | 27.59 | 19.65 |
| HORVU5Hr1G066280.1 | Barley | plastid | 21.18 | 17.55 |
| HORVU2Hr1G036960.4 | Barley | plastid | 22.17 | 15.96 |
| HORVU5Hr1G013200.1 | Barley | plastid | 21.67 | 15.55 |
| HORVU2Hr1G040780.7 | Barley | plastid | 19.21 | 14.34 |
| HORVU1Hr1G078380.1 | Barley | plastid | 18.23 | 13.96 |
| HORVU1Hr1G088880.1 | Barley | plastid | 18.23 | 13.91 |
| HORVU1Hr1G088900.1 | Barley | plastid | 18.23 | 13.91 |
| HORVU7Hr1G040370.1 | Barley | plastid | 18.23 | 13.91 |
| HORVU6Hr1G091660.1 | Barley | plastid | 18.23 | 13.91 |
| HORVU6Hr1G016880.1 | Barley | plastid | 18.23 | 13.91 |
| HORVU6Hr1G016850.1 | Barley | plastid | 18.23 | 13.91 |
| HORVU5Hr1G124160.1 | Barley | plastid | 18.23 | 13.91 |
| HORVU5Hr1G109250.1 | Barley | plastid | 18.23 | 13.91 |
| HORVU5Hr1G087250.1 | Barley | plastid | 18.23 | 13.91 |
| HORVU6Hr1G091650.1 | Barley | plastid | 18.23 | 13.03 |
| HORVU1Hr1G088870.2 | Barley | plastid | 18.23 | 12.8 |
| HORVU6Hr1G016890.6 | Barley | plastid | 18.23 | 12.76 |
| HORVU1Hr1G088920.3 | Barley | plastid | 18.23 | 12.5 |
| HORVU7Hr1G040380.1 | Barley | plastid | 18.23 | 11.86 |
| HORVU1Hr1G089180.1 | Barley | plastid | 18.23 | 11.67 |
| HORVU7Hr1G046320.2 | Barley | plastid | 16.26 | 11.58 |
| HORVU5Hr1G109360.1 | Barley | plastid | 18.23 | 11.42 |
| HORVU5Hr1G109260.4 | Barley | plastid | 18.23 | 11.42 |
| HORVU7Hr1G058120.1 | Barley | plastid | 18.23 | 11.14 |
| HORVU5Hr1G082420.1 | Barley | plastid | 17.73 | 10.5 |
| HORVU5Hr1G054000.1 | Barley | mitochondrion, plastid | 15.27 | 10.0 |
| HORVU4Hr1G015260.2 | Barley | plastid | 9.85 | 6.94 |
| HORVU1Hr1G088930.2 | Barley | endoplasmic reticulum | 3.45 | 5.93 |
| HORVU2Hr1G041270.2 | Barley | endoplasmic reticulum, plastid | 2.96 | 5.0 |
| CDX83967 | Canola | extracellular, vacuole | 0.0 | 0.0 |
Protein Annotations
| MapMan:1.1.1.1.4 | Gene3D:1.10.3460.10 | UniProt:A0A287IL92 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 |
| GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009765 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 |
| EnsemblPlantsGene:HORVU2Hr1G079910 | EnsemblPlants:HORVU2Hr1G079910.1 | InterPro:IPR023329 | PFAM:PF00504 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF2 |
| SUPFAM:SSF103511 | TMHMM:TMhelix | UniParc:UPI000B485FB6 | SEG:seg | : | : |
Description
Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A287IL92]
Coordinates
chrchr2H:-:578017988..578018880
Molecular Weight (calculated)
13126.6 Da
IEP (calculated)
5.815
GRAVY (calculated)
-0.035
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXSWLDGSLP GDFGFDPLGL GKDPAFLKWY REAELIHGRW AMAAVLGIFI
101: GQAYSGVPWF EAGAQPGAVA PFSFGSLLGT QLLLMGWVES KRWVDFFNPD SQSVEWATPW SRTXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXYRR
201: INR
101: GQAYSGVPWF EAGAQPGAVA PFSFGSLLGT QLLLMGWVES KRWVDFFNPD SQSVEWATPW SRTXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXYRR
201: INR
001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL
Arabidopsis Description
LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.