Factsheet for Bra026099.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33376	Canola	plastid	96.9	96.9
Bra026745.1-P	Field mustard	plastid	96.9	96.53
Bra016650.1-P	Field mustard	plastid	94.96	95.33
AT1G15820.1	Thale cress	plastid	94.57	94.57
KRH10515	Soybean	mitochondrion, nucleus, plastid	83.33	82.69
VIT_12s0055g01110.t01	Wine grape	plastid	82.17	82.49
KRH43915	Soybean	mitochondrion, nucleus, plastid	83.33	82.38
Solyc01g105050.2.1	Tomato	plastid	81.4	82.03
GSMUA_Achr10P...	Banana	unclear	47.29	81.88
PGSC0003DMT400032790	Potato	plastid	80.62	81.25
Zm00001d026599_P001	Maize	plastid	77.13	80.24
PGSC0003DMT400032791	Potato	plastid	79.46	80.08
Solyc01g105030.2.1	Tomato	plastid	79.07	79.69
Zm00001d001857_P001	Maize	plastid	77.91	79.45
OQU82564	Sorghum	plastid	78.29	79.22
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	77.13	78.97
TraesCS2D01G320900.1	Wheat	plastid	77.13	78.04
TraesCS2A01G342600.1	Wheat	plastid	77.13	78.04
TraesCS2B01G340300.1	Wheat	plastid	77.13	78.04
Zm00001d032051_P001	Maize	mitochondrion	25.19	72.22
HORVU2Hr1G079920.1	Barley	cytosol, mitochondrion, plastid	71.71	63.14
HORVU2Hr1G079910.1	Barley	cytosol	41.09	52.22
Zm00001d040012_P001	Maize	plastid	25.19	47.79
Zm00001d011218_P001	Maize	plastid	28.29	44.51
Bra003451.1-P	Field mustard	plastid	34.88	34.75
Bra003198.1-P	Field mustard	plastid	32.17	34.44
Bra007109.1-P	Field mustard	plastid	31.78	34.02
Bra014433.1-P	Field mustard	plastid	33.72	33.98
Bra016522.1-P	Field mustard	plastid	34.88	33.83
Bra014048.1-P	Field mustard	mitochondrion, plastid	33.33	33.33
Bra004989.1-P	Field mustard	plastid	33.33	31.16
Bra010807.1-P	Field mustard	plastid	31.01	29.96
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	18.6	29.81
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	18.6	29.81
Bra002999.1-P	Field mustard	plastid	30.62	29.81
Bra030181.1-P	Field mustard	plastid	30.62	29.59
Bra018144.1-P	Field mustard	plastid	28.68	29.37
Bra030182.1-P	Field mustard	plastid	30.23	29.21
Bra029732.1-P	Field mustard	plastid	32.56	29.17
Bra028906.1-P	Field mustard	plastid	32.56	29.17
Bra031427.1-P	Field mustard	plastid	30.23	28.57
Bra022976.1-P	Field mustard	plastid	29.46	28.57
Bra005425.1-P	Field mustard	plastid	29.46	28.57
Bra027083.1-P	Field mustard	plastid	29.46	28.04
Bra033022.1-P	Field mustard	plastid	26.36	26.36
Bra039070.1-P	Field mustard	plastid	26.74	26.04
Bra013183.1-P	Field mustard	plastid	26.74	26.04
Bra025297.1-P	Field mustard	plastid	26.74	25.94
Bra038584.1-P	Field mustard	plastid	27.52	24.74
Bra000708.1-P	Field mustard	plastid	25.97	23.93
Bra037913.1-P	Field mustard	plastid	25.19	23.13
Bra008265.1-P	Field mustard	plastid	28.68	22.84

Protein Annotations

MapMan:1.1.1.1.4	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra026099	EnsemblPlants:Bra026099.1	EnsemblPlants:Bra026099.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009534	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009941	GO:GO:0009987
GO:GO:0010196	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	GO:GO:0019904	InterPro:IPR023329	UniProt:M4EBE0	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF2	SUPFAM:SSF103511	UniParc:UPI000253F125	SEG:seg	:

Description

AT1G15820 (E=8e-124) LHCB6, CP24 | LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6); chlorophyll binding

Coordinates

chrA06:-:6151848..6152728

Molecular Weight (calculated)

27499.0 Da

IEP (calculated)

9.342

GRAVY (calculated)

0.032

Length

258 amino acids

Sequence
(BLAST)

001: MAMAVSGAVL SGLGSSFLAG GKRSAAALGS GVGAGAARVG RRTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVPWFEA GADPRAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSR TAENFANYTG DQGYPGGRFF
201: DPLGLAGKSR DGVYEPDREK LERLKLAEIK HSRLAMLAML IFYFEAGQGK TPLGALGL

Best Arabidopsis Sequence Match ( AT1G15820.1 )
(BLAST)

001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL

Arabidopsis Description

LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.