Factsheet for Bra038584.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26347	Canola	plastid	78.05	87.84
Bra031427.1-P	Field mustard	plastid	78.4	82.42
Bra027083.1-P	Field mustard	plastid	77.0	81.55
AT1G61520.1	Thale cress	plastid	76.31	80.22
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	26.48	80.0
PGSC0003DMT400020100	Potato	plastid	72.47	76.19
PGSC0003DMT400054836	Potato	plastid	72.47	76.19
Solyc10g007690.2.1	Tomato	plastid	72.13	75.82
Solyc12g011280.1.1	Tomato	plastid	71.78	75.46
KXG20345	Sorghum	plastid	68.99	74.72
Zm00001d046786_P001	Maize	plastid	69.34	74.53
VIT_15s0024g00040.t01	Wine grape	plastid	70.73	74.09
KRH74072	Soybean	mitochondrion, nucleus, plastid	70.03	72.83
KRH14048	Soybean	nucleus, plastid	70.03	72.83
TraesCS6D01G152700.1	Wheat	golgi	66.9	71.38
TraesCS6A01G159800.1	Wheat	plastid	66.9	71.38
TraesCS6B01G191500.1	Wheat	plastid	66.9	71.38
Os02t0197600-01	Rice	plastid	66.2	70.63
Bra014433.1-P	Field mustard	plastid	35.19	39.45
Bra018144.1-P	Field mustard	plastid	34.15	38.89
Bra003451.1-P	Field mustard	plastid	34.84	38.61
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	20.91	37.27
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	20.91	37.27
Bra014048.1-P	Field mustard	mitochondrion, plastid	32.06	35.66
Bra016522.1-P	Field mustard	plastid	31.36	33.83
Bra007109.1-P	Field mustard	plastid	27.87	33.2
Bra003198.1-P	Field mustard	plastid	27.87	33.2
Bra002999.1-P	Field mustard	plastid	29.97	32.45
Bra033022.1-P	Field mustard	plastid	28.92	32.17
Bra030182.1-P	Field mustard	plastid	29.27	31.46
Bra013183.1-P	Field mustard	plastid	28.92	31.32
Bra030181.1-P	Field mustard	plastid	28.92	31.09
Bra010807.1-P	Field mustard	plastid	28.92	31.09
Bra039070.1-P	Field mustard	plastid	28.57	30.94
Bra025297.1-P	Field mustard	plastid	28.57	30.83
Bra000708.1-P	Field mustard	plastid	29.97	30.71
Bra022976.1-P	Field mustard	plastid	28.22	30.45
Bra005425.1-P	Field mustard	plastid	27.87	30.08
Bra037913.1-P	Field mustard	plastid	28.92	29.54
Bra026099.1-P	Field mustard	plastid	24.74	27.52
Bra026745.1-P	Field mustard	plastid	24.74	27.41
Bra016650.1-P	Field mustard	plastid	24.39	27.24
Bra029732.1-P	Field mustard	plastid	26.48	26.39
Bra028906.1-P	Field mustard	plastid	26.13	26.04
Bra008265.1-P	Field mustard	plastid	27.18	24.07
Bra004989.1-P	Field mustard	plastid	22.65	23.55

Protein Annotations

MapMan:1.1.4.1.3	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra038584	EnsemblPlants:Bra038584.1	EnsemblPlants:Bra038584.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	UniProt:M4FBW8	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF14	SUPFAM:SSF103511	UniParc:UPI000253E54E	SEG:seg	:	:

Description

AT1G61520 (E=1e-114) LHCA3 | LHCA3; chlorophyll binding

Coordinates

chrScaffold000149:+:268658..269775

Molecular Weight (calculated)

31824.2 Da

IEP (calculated)

7.111

GRAVY (calculated)

-0.254

Length

287 amino acids

Sequence
(BLAST)

001: MDRVPCTLNP SLQTITEQSS SLGDRREEFK EQIKKWQHKH LCLLHSPPLL RQLDRYSAQN SCRGANRQLW FASSQSLSYL DGSLPGDFGF DPLGLSDPEG
101: TGGFIEPRWL AYGEIINGRF AMLGAAGTIA PEILGKVGLI PADTALPWFQ TCLIPPAGTY SYWADPYTRF VLEMALMGFA EHRRLQDWYN PGSMGKQYFL
201: GLEKGFAGSG DPAYPGGPFF NPLGFGKDEK SMKELKLKEV KNGRLAMLAI LGYFVQGLVT GVGPYQNLLD HLADPVNNNV LTSLKFH

Best Arabidopsis Sequence Match ( AT1G61520.1 )
(BLAST)

001: MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH

Arabidopsis Description

LHCA3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.