Factsheet for Bra008265.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45980	Canola	plastid	99.07	99.07
CDY20401	Canola	plastid	97.53	96.64
AT1G76570.1	Thale cress	plastid	90.12	89.3
VIT_18s0122g00430.t01	Wine grape	plastid	77.47	75.83
PGSC0003DMT400025715	Potato	plastid	74.38	75.79
EER96508	Sorghum	plastid	70.37	72.61
KRH06016	Soybean	plastid	74.38	72.59
GSMUA_Achr9P27480_001	Banana	mitochondrion	71.91	72.36
TraesCS5A01G177700.1	Wheat	plastid	68.83	71.94
Solyc04g082920.2.1	Tomato	plastid	48.15	71.56
TraesCS5B01G175000.1	Wheat	plastid	68.21	71.52
Zm00001d020002_P002	Maize	plastid	69.14	71.11
TraesCS5D01G182000.1	Wheat	plastid	67.9	70.97
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	67.9	70.97
Os09t0296800-01	Rice	plastid	68.52	69.16
KRH17548	Soybean	cytosol, peroxisome, plastid	34.57	55.45
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	23.15	46.58
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	23.15	46.58
Bra022976.1-P	Field mustard	plastid	34.57	42.11
Bra010807.1-P	Field mustard	plastid	34.57	41.95
Bra030181.1-P	Field mustard	plastid	34.26	41.57
Bra030182.1-P	Field mustard	plastid	34.26	41.57
Bra033022.1-P	Field mustard	plastid	33.02	41.47
Bra005425.1-P	Field mustard	plastid	33.95	41.35
Bra039070.1-P	Field mustard	plastid	33.64	41.13
Bra025297.1-P	Field mustard	plastid	33.64	40.98
Bra002999.1-P	Field mustard	plastid	33.33	40.75
Bra013183.1-P	Field mustard	plastid	33.02	40.38
Bra000708.1-P	Field mustard	plastid	32.72	37.86
Bra037913.1-P	Field mustard	plastid	31.79	36.65
Bra003198.1-P	Field mustard	plastid	27.16	36.51
Bra007109.1-P	Field mustard	plastid	27.16	36.51
Bra014048.1-P	Field mustard	mitochondrion, plastid	25.93	32.56
Bra014433.1-P	Field mustard	plastid	25.31	32.03
Bra018144.1-P	Field mustard	plastid	24.69	31.75
Bra003451.1-P	Field mustard	plastid	25.31	31.66
Bra027083.1-P	Field mustard	plastid	25.62	30.63
Bra029732.1-P	Field mustard	plastid	27.16	30.56
Bra028906.1-P	Field mustard	plastid	27.16	30.56
Bra031427.1-P	Field mustard	plastid	25.62	30.4
Bra016522.1-P	Field mustard	plastid	24.07	29.32
Bra026099.1-P	Field mustard	plastid	22.84	28.68
Bra004989.1-P	Field mustard	plastid	24.38	28.62
Bra016650.1-P	Field mustard	plastid	22.22	28.02
Bra026745.1-P	Field mustard	plastid	21.91	27.41
Bra038584.1-P	Field mustard	plastid	24.07	27.18

Protein Annotations

MapMan:1.1.1.1.5	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra008265	EnsemblPlants:Bra008265.1	EnsemblPlants:Bra008265.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009637	GO:GO:0009765	GO:GO:0009987	GO:GO:0010218
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
InterPro:IPR023329	UniProt:M4CVL8	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF24	SUPFAM:SSF103511
UniParc:UPI0002545F27	SEG:seg	:	:	:	:

Description

AT1G76570 (E=2e-162) | chlorophyll A-B binding family protein

Coordinates

chrA02:+:14207818..14210028

Molecular Weight (calculated)

36115.8 Da

IEP (calculated)

8.415

GRAVY (calculated)

-0.035

Length

324 amino acids

Sequence
(BLAST)

001: MALFQDMLSL SSTFHSLPRR LLPEPPRRRL AVKRPRSICR ASWQELAGVL VFSAIPFTAV KAIANSSLGE SLRRRLEEKK KEAVENASRF NAKAQKARAD
101: SKWYGQERPR WFGPIPYDYP PYLTGELPGD YGFDIAGLGK DRLNFDKYFN FEILHARWAM LAALGALIPE VFDLTGAFHF VEPVWWRVGY SKLQGETLDY
201: LGIPGLHVAG SQGVIVIAIC QALLMVGPEY ARYCGIEALE PLGIYLPGDI NYPGGTLFDP LNLSQDPVAF EDLKVKEIKN GRLAMVAWLG FYAQAAVTGK
301: GPVQNLVDHV SDPLHNNLLA ILQI

Best Arabidopsis Sequence Match ( AT1G76570.1 )
(BLAST)

001: MALFQEKLSS LSSSYSSIHS LPRILVSKPR NRIAVTKSRS ICRASWQELA GVLVFSAIPF TAVKAIANSS IGVSLRRRLE EKKKEAVENS SRFKSKAQEA
101: RNDSKWYGKE RPRWFGPIPY DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT FHFAEPVWWR VGYSKLQGET
201: LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPLHNN LIAMLQT

Arabidopsis Description

LHCB7Chlorophyll a-b binding protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.