CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06016	Soybean	plastid	66.83	40.66
Solyc04g082920.2.1	Tomato	plastid	40.1	37.16
PGSC0003DMT400025715	Potato	plastid	57.92	36.79
VIT_18s0122g00430.t01	Wine grape	plastid	57.43	35.05
Bra008265.1-P	Field mustard	plastid	55.45	34.57
CDY45980	Canola	plastid	55.45	34.57
EER96508	Sorghum	plastid	53.47	34.39
TraesCS5D01G182000.1	Wheat	plastid	51.98	33.87
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	51.98	33.87
TraesCS5B01G175000.1	Wheat	plastid	51.49	33.66
Zm00001d020002_P002	Maize	plastid	52.48	33.65
CDY20401	Canola	plastid	54.46	33.64
TraesCS5A01G177700.1	Wheat	plastid	51.49	33.55
GSMUA_Achr9P27480_001	Banana	mitochondrion	52.97	33.23
AT1G76570.1	Thale cress	plastid	53.47	33.03
Os09t0296800-01	Rice	plastid	52.48	33.02
KRH08669	Soybean	nucleus, plastid	36.14	27.65
KRH08672	Soybean	mitochondrion, nucleus, plastid	36.14	27.65
KRH08676	Soybean	nucleus, plastid	36.14	27.65
KRH58441	Soybean	mitochondrion, plastid	35.15	27.0
KRH42317	Soybean	mitochondrion, nucleus, plastid	35.15	27.0
KRH14122	Soybean	nucleus, plastid	34.65	26.42
KRH74003	Soybean	nucleus, plastid	34.65	26.42
KRH22164	Soybean	nucleus, plastid	33.17	25.09
KRH27171	Soybean	mitochondrion, nucleus, plastid	33.17	25.0
KRH08634	Soybean	endoplasmic reticulum	14.85	24.19
KRH09238	Soybean	mitochondrion, nucleus, plastid	34.16	23.88
KRH38736	Soybean	nucleus, plastid	34.16	23.71
KRH34336	Soybean	plastid	33.66	23.69
KRG92462	Soybean	nucleus, plastid	33.66	23.61
KRH70044	Soybean	mitochondrion, nucleus, plastid	26.73	21.95
KRH70280	Soybean	plastid	26.73	21.69
KRH08384	Soybean	nucleus, plastid	25.74	21.14
KRH14048	Soybean	nucleus, plastid	26.73	19.57
KRH74072	Soybean	mitochondrion, nucleus, plastid	26.73	19.57
KRH37524	Soybean	plastid	24.75	19.23
KRH12566	Soybean	plastid	24.75	19.23
KRH54568	Soybean	nucleus, plastid	22.77	18.25
KRH63318	Soybean	plastid	22.77	18.25
KRH06319	Soybean	nucleus, plastid	24.26	18.15
KRH65776	Soybean	nucleus, plastid	25.74	17.93
KRH75874	Soybean	mitochondrion, nucleus, plastid	25.74	17.93
KRH47742	Soybean	nucleus	24.26	17.38
KRH58296	Soybean	plastid	20.79	17.28
KRH10515	Soybean	mitochondrion, nucleus, plastid	20.79	16.15
KRH43915	Soybean	mitochondrion, nucleus, plastid	20.79	16.09
KRH42185	Soybean	mitochondrion, nucleus, plastid	20.3	15.89
KRH68993	Soybean	plastid	23.76	15.58
KRG97750	Soybean	plastid	20.3	14.75
KRH51989	Soybean	nucleus	20.79	14.74
KRH31130	Soybean	nucleus, plastid	20.3	14.54
KRH58809	Soybean	mitochondrion	19.8	12.62
KRH61286	Soybean	mitochondrion	11.39	10.5

Protein Annotations

Gene3D:1.10.3460.10	MapMan:35.1	UniProt:A0A0R0GGF2	EMBL:ACUP02009097	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_14G224100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	EnsemblPlants:KRH17548	ProteinID:KRH17548	ProteinID:KRH17548.1
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF24	SUPFAM:SSF103511	UniParc:UPI0006ED85B5	:

Description

hypothetical protein

Coordinates

chr14:+:48919776..48925347

Molecular Weight (calculated)

22750.3 Da

IEP (calculated)

4.906

GRAVY (calculated)

-0.089

Length

202 amino acids

Sequence
(BLAST)

001: MKEVRMKKIE DLLENLTEFS NKGIVGWNAL GNLENGGHRD GVEAGSFWYG EDGPPWLGSI SYKYPSYLTG EMPGDYDFDI VGLGQDPVEF FEILHARWVT
101: LAFVSAVIPK ILNLLGAVHF VEPVWWRAGY SKLKVNTLDY LRIQGLHLAG RALFDPLNLS NDPEAFEELK VKEVKNGSLI DHISDPFHNN LLGSLNFIKI
201: VM

Best Arabidopsis Sequence Match ( AT1G76570.1 )
(BLAST)

001: MALFQEKLSS LSSSYSSIHS LPRILVSKPR NRIAVTKSRS ICRASWQELA GVLVFSAIPF TAVKAIANSS IGVSLRRRLE EKKKEAVENS SRFKSKAQEA
101: RNDSKWYGKE RPRWFGPIPY DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT FHFAEPVWWR VGYSKLQGET
201: LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPLHNN LIAMLQT

Arabidopsis Description

LHCB7Chlorophyll a-b binding protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.