CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22164	Soybean	nucleus, plastid	99.25	99.63
VIT_00s0181g00180.t01	Wine grape	plastid	90.67	90.33
VIT_00s0181g00200.t01	Wine grape	plastid	90.3	89.96
Bra002999.1-P	Field mustard	plastid	88.06	89.06
GSMUA_AchrUn_...	Banana	plastid	76.49	88.74
AT5G54270.1	Thale cress	plastid	87.69	88.68
OQU90095	Sorghum	plastid	88.43	88.43
Solyc12g011450.1.1	Tomato	plastid	87.31	88.3
PGSC0003DMT400022072	Potato	plastid	87.31	88.3
Zm00001d021784_P001	Maize	plastid	88.43	88.1
Os07t0562700-01	Rice	extracellular, plastid	84.33	84.96
GSMUA_Achr1P08770_001	Banana	plastid, unclear	76.12	84.65
TraesCS2A01G204800.1	Wheat	plastid	84.33	84.33
TraesCS1D01G428200.1	Wheat	plastid	84.33	84.33
TraesCS1B01G451100.1	Wheat	plastid	84.33	84.33
HORVU2Hr1G040780.7	Barley	plastid	83.21	81.99
KRH08634	Soybean	endoplasmic reticulum	35.45	76.61
CDY28778	Canola	plastid	72.39	75.78
KRH08669	Soybean	nucleus, plastid	67.54	68.56
KRH08672	Soybean	mitochondrion, nucleus, plastid	67.54	68.56
KRH08676	Soybean	nucleus, plastid	67.54	68.56
KRH42317	Soybean	mitochondrion, nucleus, plastid	67.16	68.44
KRH58441	Soybean	mitochondrion, plastid	67.16	68.44
KRH14122	Soybean	nucleus, plastid	67.16	67.92
KRH74003	Soybean	nucleus, plastid	67.16	67.92
KRH70280	Soybean	plastid	56.72	61.04
Zm00001d006592_P001	Maize	plastid	26.12	56.91
KRH34336	Soybean	plastid	41.42	38.68
KRG92462	Soybean	nucleus, plastid	41.42	38.54
KRH38736	Soybean	nucleus, plastid	41.79	38.49
KRH09238	Soybean	mitochondrion, nucleus, plastid	41.42	38.41
KRH08384	Soybean	nucleus, plastid	32.84	35.77
KRH70044	Soybean	mitochondrion, nucleus, plastid	32.46	35.37
KRH14048	Soybean	nucleus, plastid	35.07	34.06
KRH74072	Soybean	mitochondrion, nucleus, plastid	35.07	34.06
KRH17548	Soybean	cytosol, peroxisome, plastid	25.0	33.17
KRH12566	Soybean	plastid	32.09	33.08
KRH54568	Soybean	nucleus, plastid	30.6	32.54
KRH63318	Soybean	plastid	30.6	32.54
KRH37524	Soybean	plastid	31.34	32.31
KRH06016	Soybean	plastid	39.93	32.23
KRH65776	Soybean	nucleus, plastid	34.33	31.72
KRH75874	Soybean	mitochondrion, nucleus, plastid	34.33	31.72
KRH58296	Soybean	plastid	27.61	30.45
KRH06319	Soybean	nucleus, plastid	29.85	29.63
KRH43915	Soybean	mitochondrion, nucleus, plastid	28.36	29.12
KRH10515	Soybean	mitochondrion, nucleus, plastid	27.99	28.85
KRG97750	Soybean	plastid	29.48	28.42
KRH42185	Soybean	mitochondrion, nucleus, plastid	27.24	28.29
KRH51989	Soybean	nucleus	29.48	27.72
KRH31130	Soybean	nucleus, plastid	29.1	27.66
KRH47742	Soybean	nucleus	28.73	27.3
KRH68993	Soybean	plastid	29.85	25.97
KRH58809	Soybean	mitochondrion	28.36	23.97
KRH61286	Soybean	mitochondrion	14.93	18.26

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:100779387	EMBL:ACUP02007781	EMBL:BT098334	UniProt:C6TKW2
InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_12G219300	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768
GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EnsemblPlants:KRH27171
ProteinID:KRH27171	ProteinID:KRH27171.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF11	SUPFAM:SSF103511
UniParc:UPI0001B16E39	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:37885936..37887903

Molecular Weight (calculated)

28813.5 Da

IEP (calculated)

4.897

GRAVY (calculated)

-0.002

Length

268 amino acids

Sequence
(BLAST)

001: MAATLMAATT SSGTLKATPF LGQGKGANAN ALRDVVSMGT GKYTMGNDLW YGPDRVKYLG PFSAQTPSYL KGEFPGDYGW DTAGLSADPE AFAKNRALEV
101: IHGRWAMLGA LGCITPEVLE KWLRVDFKEP VWFKAGAQIF SEGGLDYLGN PNLVHAQSIL AVLGFQVILM GLVEGYRING LDGVGEGNDL YPGGQYFDPL
201: GLADDPVTFA ELKVKEIKNG RLAMFSMFGF FVQAIVTGKG PLENLLDHLD NPVANNAWVY ATKFSPGS

Best Arabidopsis Sequence Match ( AT5G54270.1 )
(BLAST)

001: MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA

Arabidopsis Description

LHCB3Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.