CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021784_P001	Maize	plastid	99.25	98.88
TraesCS1D01G428200.1	Wheat	plastid	92.54	92.54
TraesCS1B01G451100.1	Wheat	plastid	92.54	92.54
TraesCS2A01G204800.1	Wheat	plastid	92.16	92.16
Os07t0562700-01	Rice	extracellular, plastid	91.04	91.73
Solyc07g063600.2.1	Tomato	nucleus	87.31	89.31
PGSC0003DMT400049550	Potato	plastid	87.31	89.31
GSMUA_AchrUn_...	Banana	plastid	76.87	89.18
VIT_19s0014g03660.t01	Wine grape	plastid	88.43	89.1
KRH22164	Soybean	nucleus, plastid	88.43	88.76
HORVU2Hr1G040780.7	Barley	plastid	89.93	88.6
KRH27171	Soybean	mitochondrion, nucleus, plastid	88.43	88.43
PGSC0003DMT400022072	Potato	plastid	87.31	88.3
AT5G54270.1	Thale cress	plastid	86.94	87.92
Solyc12g011450.1.1	Tomato	plastid	86.94	87.92
Bra002999.1-P	Field mustard	plastid	86.57	87.55
GSMUA_Achr1P08770_001	Banana	plastid, unclear	77.61	86.31
CDY28778	Canola	plastid	72.01	75.39
EER97145	Sorghum	extracellular, vacuole	47.76	74.85
EER93861	Sorghum	plastid	70.9	72.52
EER97143	Sorghum	plastid	67.54	69.08
EES01022	Sorghum	plastid	67.16	67.92
EES18693	Sorghum	plastid	66.79	67.55
OQU87124	Sorghum	plastid	66.04	67.05
Zm00001d006592_P001	Maize	plastid	28.73	62.6
KXG33266	Sorghum	extracellular	42.54	49.35
EES09551	Sorghum	plastid	41.79	39.72
EES04597	Sorghum	plastid	31.72	34.69
KXG20345	Sorghum	plastid	33.58	33.96
EER96508	Sorghum	plastid	39.55	33.76
KXG25214	Sorghum	plastid	30.97	33.07
EER99537	Sorghum	plastid	33.96	31.6
KXG36552	Sorghum	plastid	30.97	31.56
EES07574	Sorghum	plastid	30.97	31.2
KXG35708	Sorghum	plastid	29.48	28.73
OQU82564	Sorghum	plastid	27.24	28.63

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:8081748	UniProt:A0A1W0W709	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	InterPro:IPR023329	EnsemblPlants:OQU90095	ProteinID:OQU90095	ProteinID:OQU90095.1	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF11	EnsemblPlantsGene:SORBI_3002G339200	SUPFAM:SSF103511	UniParc:UPI0001A836BC	RefSeq:XP_002460856.1

Description

hypothetical protein

Coordinates

chr2:+:70634160..70635676

Molecular Weight (calculated)

28736.4 Da

IEP (calculated)

4.897

GRAVY (calculated)

0.081

Length

268 amino acids

Sequence
(BLAST)

001: MASTIMAATS RVVAAKTPFL GQGRAAANAS PLRDVAAAAS GRITMGNDLW YGPDRVKYLG PFSAQTPSYL TGEFPGDYGW DTAGLSADPE AFARNRALEV
101: IHGRWAMLGA LGCITPEVLE KWVRVDFKEP VWFKAGAQIF SEGGLDYLGN PNLVHAQSIL AVLGFQVILM GLVEGFRING LDGVGEGNNL YPGGQYFDPL
201: GLADDPVTFA ELKVKEIKNG RLAMFSMFGF FVQAIVTGKG PLENLLDHLD DPVANNAWVY ATKFAPGS

Best Arabidopsis Sequence Match ( AT5G54270.1 )
(BLAST)

001: MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA

Arabidopsis Description

LHCB3Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.