Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52238 | Canola | plastid | 85.66 | 97.01 |
| Bra002999.1-P | Field mustard | plastid | 96.98 | 96.98 |
| CDY66572 | Canola | cytosol, extracellular, plastid | 49.43 | 91.61 |
| KRH22164 | Soybean | nucleus, plastid | 88.68 | 88.02 |
| Solyc07g063600.2.1 | Tomato | nucleus | 86.79 | 87.79 |
| PGSC0003DMT400049550 | Potato | plastid | 86.79 | 87.79 |
| KRH27171 | Soybean | mitochondrion, nucleus, plastid | 88.68 | 87.69 |
| VIT_19s0014g03660.t01 | Wine grape | plastid | 87.92 | 87.59 |
| GSMUA_AchrUn_... | Banana | plastid | 76.23 | 87.45 |
| Solyc12g011450.1.1 | Tomato | plastid | 87.17 | 87.17 |
| OQU90095 | Sorghum | plastid | 87.92 | 86.94 |
| PGSC0003DMT400022072 | Potato | plastid | 86.79 | 86.79 |
| VIT_00s0181g00180.t01 | Wine grape | plastid | 87.92 | 86.62 |
| Zm00001d021784_P001 | Maize | plastid | 87.55 | 86.25 |
| VIT_00s0181g00200.t01 | Wine grape | plastid | 87.55 | 86.25 |
| TraesCS2A01G204800.1 | Wheat | plastid | 86.04 | 85.07 |
| TraesCS1B01G451100.1 | Wheat | plastid | 86.04 | 85.07 |
| TraesCS1D01G428200.1 | Wheat | plastid | 86.04 | 85.07 |
| GSMUA_Achr1P08770_001 | Banana | plastid, unclear | 76.6 | 84.23 |
| HORVU2Hr1G040780.7 | Barley | plastid | 84.53 | 82.35 |
| Os07t0562700-01 | Rice | extracellular, plastid | 82.26 | 81.95 |
| AT2G34420.1 | Thale cress | plastid | 69.43 | 69.43 |
| AT1G29930.1 | Thale cress | plastid | 68.68 | 68.16 |
| AT1G29920.1 | Thale cress | plastid | 68.68 | 68.16 |
| AT1G29910.1 | Thale cress | plastid | 68.68 | 68.16 |
| AT2G34430.1 | Thale cress | plastid | 67.92 | 67.67 |
| AT2G05070.1 | Thale cress | plastid | 67.17 | 67.17 |
| AT3G27690.2 | Thale cress | golgi, plastid | 67.92 | 60.4 |
| Zm00001d006592_P001 | Maize | plastid | 27.55 | 59.35 |
| AT2G05100.2 | Thale cress | plastid | 62.26 | 52.05 |
| AT4G10340.1 | Thale cress | plastid | 41.13 | 38.93 |
| AT3G54890.1 | Thale cress | plastid | 32.08 | 35.27 |
| AT3G47470.1 | Thale cress | plastid | 31.32 | 33.07 |
| AT1G76570.1 | Thale cress | plastid | 40.0 | 32.42 |
| AT3G61470.1 | Thale cress | plastid | 31.32 | 32.3 |
| AT1G61520.1 | Thale cress | plastid | 33.21 | 32.23 |
| AT3G08940.2 | Thale cress | plastid | 33.58 | 31.01 |
| AT1G45474.2 | Thale cress | mitochondrion | 29.43 | 30.47 |
| AT1G15820.1 | Thale cress | plastid | 29.43 | 30.23 |
| AT5G01530.1 | Thale cress | plastid | 32.45 | 29.66 |
| AT1G19150.1 | Thale cress | plastid | 30.19 | 29.63 |
| AT5G28450.1 | Thale cress | plastid | 18.87 | 28.9 |
| AT2G40100.1 | Thale cress | plastid | 27.55 | 26.45 |
Protein Annotations
| MapMan:1.1.1.1.1 | Gene3D:1.10.3460.10 | EntrezGene:835515 | UniProt:A0A178USW4 | ProteinID:AED96477.1 | EMBL:AF134126 |
| EMBL:AF143691 | EMBL:AF361858 | EMBL:AF372917 | EMBL:AK318653 | ArrayExpress:AT5G54270 | EnsemblPlantsGene:AT5G54270 |
| RefSeq:AT5G54270 | TAIR:AT5G54270 | RefSeq:AT5G54270-TAIR-G | EnsemblPlants:AT5G54270.1 | TAIR:AT5G54270.1 | EMBL:AY057735 |
| Unigene:At.49175 | ProteinID:BAB10750.1 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 |
| GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009635 | GO:GO:0009644 | GO:GO:0009719 | GO:GO:0009737 |
| GO:GO:0009765 | GO:GO:0009768 | GO:GO:0009769 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010119 |
| GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 |
| GO:GO:0019538 | GO:GO:0019904 | GO:GO:0031409 | GO:GO:0042651 | GO:GO:0046872 | InterPro:IPR023329 |
| Symbol:LHCB3 | RefSeq:NP_200238.1 | ProteinID:OAO95972.1 | PFAM:PF00504 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0006339 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR21649 | PANTHER:PTHR21649:SF11 | UniProt:Q9S7M0 | SUPFAM:SSF103511 | UniParc:UPI00000A3271 | EMBL:Z18479 |
Description
LHCB3Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M0]
Coordinates
chr5:+:22038165..22039568
Molecular Weight (calculated)
28708.2 Da
IEP (calculated)
4.735
GRAVY (calculated)
0.034
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.