CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14320	Canola	plastid	95.3	95.3
CDY18320	Canola	plastid	94.87	94.87
CDY66572	Canola	cytosol, extracellular, plastid	56.41	92.31
AT5G54270.1	Thale cress	plastid	97.01	85.66
TraesCS2A01G204800.1	Wheat	plastid	83.33	72.76
TraesCS1D01G428200.1	Wheat	plastid	83.33	72.76
TraesCS1B01G451100.1	Wheat	plastid	83.33	72.76
CDY28778	Canola	plastid	79.06	72.27
Os07t0562700-01	Rice	extracellular, plastid	80.34	70.68
HORVU2Hr1G040780.7	Barley	plastid	81.62	70.22
CDY26306	Canola	plastid	68.38	59.93
CDX99866	Canola	plastid	68.38	59.93
CDY15050	Canola	plastid	67.52	59.62
CDX93077	Canola	plastid	67.52	59.62
CDY66768	Canola	plastid	67.95	59.55
CDY43676	Canola	plastid	67.95	59.55
CDY35271	Canola	plastid	67.95	59.55
CDX90218	Canola	plastid	67.95	59.55
CDX84647	Canola	plastid	67.52	59.4
CDX79562	Canola	plastid	67.52	59.4
CDY17247	Canola	plastid	67.09	59.02
CDY03989	Canola	plastid	67.09	59.02
CDX84316	Canola	plastid	67.09	59.02
CDY20039	Canola	plastid	66.67	58.87
CDX98158	Canola	plastid	67.09	58.8
CDY43198	Canola	plastid	67.09	58.8
CDY49770	Canola	plastid	66.67	58.65
CDY13732	Canola	plastid	66.67	58.65
CDY17248	Canola	plastid	66.67	58.65
CDY00149	Canola	plastid	66.67	58.65
CDX83726	Canola	plastid	65.81	57.89
CDY30369	Canola	plastid	36.75	56.58
CDY17250	Canola	mitochondrion, plastid	35.9	51.53
CDX84315	Canola	plastid	66.67	47.42
CDX83967	Canola	extracellular, vacuole	3.85	39.13
CDY05098	Canola	plastid	43.16	36.07
CDX90755	Canola	plastid	43.16	36.07
CDY60092	Canola	plastid	42.73	35.59
CDX78277	Canola	plastid	33.33	32.37
CDY43936	Canola	plastid	35.04	32.03
CDX73435	Canola	plastid	32.91	31.95
CDX67613	Canola	plastid	32.91	31.95
CDY07517	Canola	plastid	32.91	31.95
CDX89120	Canola	plastid	34.62	31.64
CDY51572	Canola	plastid	34.19	30.89
CDY26347	Canola	plastid	33.33	30.59
CDY57375	Canola	plastid	35.04	30.26
CDY12903	Canola	plastid	35.04	30.26
CDX99044	Canola	plastid	32.48	30.16
CDY47410	Canola	plastid	32.48	30.16
CDY15020	Canola	plastid	34.62	29.89
CDY47581	Canola	plastid	34.62	29.67
CDY03835	Canola	plastid	34.62	29.67
CDY45980	Canola	plastid	41.03	29.63
CDY20401	Canola	plastid	40.6	29.05
CDX86864	Canola	plastid	25.64	28.71
CDX83966	Canola	plastid	27.78	28.51
CDY43213	Canola	mitochondrion, plastid	30.34	27.52
CDY17055	Canola	mitochondrion, plastid	29.91	27.13
CDY52865	Canola	plastid	29.91	27.03
CDX96833	Canola	plastid	29.91	27.03
CDY35042	Canola	plastid	29.49	26.74
CDY33376	Canola	plastid	29.49	26.74
CDX81735	Canola	plastid	29.49	26.64
CDX96677	Canola	plastid	29.91	26.32
CDX83783	Canola	plastid	29.91	26.32
CDY44667	Canola	plastid	31.62	25.69
CDY53084	Canola	plastid	31.62	25.61
CDY04834	Canola	plastid	31.2	25.44
CDX74808	Canola	plastid	27.35	23.19
CDY20518	Canola	plastid	26.92	22.83
CDY61708	Canola	plastid	22.65	15.14

Protein Annotations

Gene3D:1.10.3460.10	MapMan:35.1	GO:A0A078IT63	UniProt:A0A078IT63	EnsemblPlants:CDY52238	ProteinID:CDY52238
ProteinID:CDY52238.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00005208001	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF11	SUPFAM:SSF103511	UniParc:UPI0004EE5562	SEG:seg

Description

BnaC02g44590DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078IT63]

Coordinates

chrLK033070:+:23792..25607

Molecular Weight (calculated)

25460.2 Da

IEP (calculated)

5.003

GRAVY (calculated)

-0.080

Length

234 amino acids

Sequence
(BLAST)

001: MASTFTSSSN VLCPTTFLGQ TRSSSFNPLR DVVSLGSPKY TMGNDIWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GFRINGLDGV GGGNDLYPGG QYFDPLGLAD DPVTFAELKV KEIKNGRLAM FSMFGFFVQA
201: IVTGKGPLEN LLDHLDNPVA NNAWAFATKF VPGA

Best Arabidopsis Sequence Match ( AT5G54270.1 )
(BLAST)

001: MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA

Arabidopsis Description

LHCB3Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.