CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039070.1-P	Field mustard	plastid	100.0	100.0
CDY49770	Canola	plastid	100.0	99.62
CDY00149	Canola	plastid	99.62	99.25
CDY03989	Canola	plastid	99.62	99.25
CDY13732	Canola	plastid	99.62	99.25
CDX83726	Canola	plastid	99.25	98.87
CDX93077	Canola	plastid	96.98	96.98
CDY15050	Canola	plastid	96.6	96.6
Solyc12g006140.1.1	Tomato	plastid	88.68	88.68
VIT_12s0057g00630.t01	Wine grape	plastid	88.68	88.68
KRH74003	Soybean	nucleus, plastid	88.3	88.3
PGSC0003DMT400010985	Potato	plastid	87.92	87.92
KRH14122	Soybean	nucleus, plastid	87.17	87.17
GSMUA_Achr4P33040_001	Banana	plastid, unclear	86.42	86.74
AT3G27690.2	Thale cress	golgi, plastid	97.36	86.58
PGSC0003DMT400015740	Potato	plastid	85.66	85.66
Os03t0592500-01	Rice	extracellular	84.91	85.55
Solyc07g047850.2.1	Tomato	plastid	85.28	85.28
Zm00001d033132_P001	Maize	plastid	83.02	84.62
Zm00001d033136_P001	Maize	plastid	83.02	84.62
TraesCS5A01G322500.1	Wheat	plastid	83.4	84.03
TraesCS5D01G329200.1	Wheat	plastid	83.4	84.03
TraesCS5B01G322900.1	Wheat	plastid	83.4	84.03
EER93861	Sorghum	plastid	83.02	83.97
CDY30369	Canola	plastid	46.42	80.92
CDX84647	Canola	plastid	75.47	75.19
CDY43676	Canola	plastid	75.47	74.91
CDY66768	Canola	plastid	75.47	74.91
CDX79562	Canola	plastid	75.09	74.81
CDX90218	Canola	plastid	75.09	74.53
CDY35271	Canola	plastid	75.09	74.53
CDX99866	Canola	plastid	75.09	74.53
CDY26306	Canola	plastid	75.09	74.53
CDY43198	Canola	plastid	75.09	74.53
CDX84316	Canola	plastid	74.72	74.44
CDY17248	Canola	plastid	74.72	74.44
CDY17247	Canola	plastid	74.72	74.44
CDX98158	Canola	plastid	74.34	73.78
Zm00001d013766_P001	Maize	plastid	38.49	70.83
CDY17250	Canola	mitochondrion, plastid	42.26	68.71
CDY66572	Canola	cytosol, extracellular, plastid	36.98	68.53
CDY14320	Canola	plastid	59.62	67.52
CDY18320	Canola	plastid	59.25	67.09
CDY52238	Canola	plastid	58.87	66.67
HORVU5Hr1G082420.1	Barley	plastid	83.02	64.14
CDY28778	Canola	plastid	58.11	60.16
CDX84315	Canola	plastid	74.34	59.88
CDY05098	Canola	plastid	41.51	39.29
CDX90755	Canola	plastid	41.51	39.29
CDY60092	Canola	plastid	40.0	37.72
CDX67613	Canola	plastid	31.7	34.85
CDX78277	Canola	plastid	31.7	34.85
CDX73435	Canola	plastid	31.7	34.85
CDY07517	Canola	plastid	31.7	34.85
CDX83967	Canola	extracellular, vacuole	3.02	34.78
CDY45980	Canola	plastid	41.13	33.64
CDY20401	Canola	plastid	41.51	33.64
CDY43936	Canola	plastid	31.7	32.81
CDX86864	Canola	plastid	25.66	32.54
CDX89120	Canola	plastid	31.32	32.42
CDX99044	Canola	plastid	30.19	31.75
CDY47410	Canola	plastid	30.19	31.75
CDY51572	Canola	plastid	30.94	31.66
CDY26347	Canola	plastid	30.19	31.37
CDY57375	Canola	plastid	32.08	31.37
CDY12903	Canola	plastid	32.08	31.37
CDY03835	Canola	plastid	32.08	31.14
CDY47581	Canola	plastid	32.08	31.14
CDY15020	Canola	plastid	31.7	31.0
CDX96677	Canola	plastid	30.94	30.83
CDX83783	Canola	plastid	30.94	30.83
CDY44667	Canola	plastid	32.45	29.86
CDY53084	Canola	plastid	32.45	29.76
CDY04834	Canola	plastid	32.08	29.62
CDY43213	Canola	mitochondrion, plastid	28.3	29.07
CDY17055	Canola	mitochondrion, plastid	27.92	28.68
CDX74808	Canola	plastid	29.06	27.9
CDY20518	Canola	plastid	28.68	27.54
CDX81735	Canola	plastid	26.42	27.03
CDY52865	Canola	plastid	26.42	27.03
CDX96833	Canola	plastid	26.42	27.03
CDY33376	Canola	plastid	25.66	26.36
CDY35042	Canola	plastid	25.66	26.36
CDX83966	Canola	plastid	21.89	25.44
CDY61708	Canola	plastid	25.28	19.14

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	GO:A0A078G3T1	UniProt:A0A078G3T1	EnsemblPlants:CDY20039	ProteinID:CDY20039
ProteinID:CDY20039.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00009877001	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF33	SUPFAM:SSF103511	UniParc:UPI0002541B9A	SEG:seg

Description

BnaA09g02120DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078G3T1]

Coordinates

chrLK032102:-:582732..583873

Molecular Weight (calculated)

28611.1 Da

IEP (calculated)

5.699

GRAVY (calculated)

-0.124

Length

265 amino acids

Sequence
(BLAST)

001: MATSAIQHSS FAGQTALKPS NDLLRKVGAS NGGRVVMRRT VKSTPQSIWY GPDRPKYLGP FSENTPSYLT GEYPGDYGWD TAGLSADPET FAKNRELEVI
101: HSRWAMLGAL GCTFPEILSK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WASQVVLMGL IEGYRIGGGP LGEGLDPLYP GGAFDPLNLA
201: EDPEAFSELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIE NLFDHVADPV ANNAWAYATN FVPGK

Best Arabidopsis Sequence Match ( AT2G05100.1 )
(BLAST)

001: MATSAIQQSS FAGQTALKPS NELLRKVGVS GGGRVTMRRT VKSTPQSIWY GPDRPKYLGP FSENTPSYLT GEYPGDYGWD TAGLSADPET FAKNRELEVI
101: HSRWAMLGAL GCTFPEILSK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WAVQVVLMGF IEGYRIGGGP LGEGLDPLYP GGAFDPLNLA
201: EDPEAFSELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIE NLFDHLADPV ANNAWSYATN FVPGN

Arabidopsis Description

LHCB2.1photosystem II light harvesting complex gene 2.1 [Source:TAIR;Acc:AT2G05100]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.