CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029732.1-P	Field mustard	plastid	100.0	100.0
CDY53084	Canola	plastid	98.61	98.27
AT3G08940.2	Thale cress	plastid	95.83	96.17
CDY04834	Canola	plastid	93.75	94.08
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	46.88	92.47
HORVU2Hr1G041270.2	Barley	endoplasmic reticulum, plastid	37.85	90.83
Solyc09g014520.2.1	Tomato	plastid	86.46	87.37
PGSC0003DMT400021871	Potato	plastid	85.42	86.32
KRH75874	Soybean	mitochondrion, nucleus, plastid	86.81	86.21
KRH65776	Soybean	nucleus, plastid	86.46	85.86
EER99537	Sorghum	plastid	84.03	84.03
Os07t0558400-01	Rice	plasma membrane, plastid	84.03	83.45
Zm00001d021763_P001	Maize	plastid	83.33	82.47
Zm00001d006587_P001	Maize	plastid	83.33	82.47
TraesCS2D01G209900.1	Wheat	plastid	81.25	81.82
TraesCS2B01G233400.1	Wheat	plastid	81.25	81.82
TraesCS2A01G206200.1	Wheat	plastid	81.25	81.82
VIT_08s0007g02190.t01	Wine grape	plastid	83.33	70.18
HORVU5Hr1G013200.1	Barley	plastid	68.4	69.61
CDY20518	Canola	plastid	66.32	69.2
CDX74808	Canola	plastid	65.62	68.48
CDX67613	Canola	plastid	35.76	42.74
CDY07517	Canola	plastid	35.76	42.74
CDX78277	Canola	plastid	35.76	42.74
CDX73435	Canola	plastid	35.76	42.74
CDY61708	Canola	plastid	51.74	42.57
CDY30369	Canola	plastid	21.18	40.13
CDX83967	Canola	extracellular, vacuole	3.12	39.13
CDX84316	Canola	plastid	34.03	36.84
CDX79562	Canola	plastid	34.03	36.84
CDX84647	Canola	plastid	34.03	36.84
CDY17247	Canola	plastid	34.03	36.84
CDY17248	Canola	plastid	34.03	36.84
CDY43198	Canola	plastid	34.03	36.7
CDX99044	Canola	plastid	31.94	36.51
CDY47410	Canola	plastid	31.94	36.51
CDY66572	Canola	cytosol, extracellular, plastid	18.06	36.36
CDY43676	Canola	plastid	33.68	36.33
CDY26306	Canola	plastid	33.68	36.33
CDY35271	Canola	plastid	33.68	36.33
CDY66768	Canola	plastid	33.68	36.33
CDX99866	Canola	plastid	33.68	36.33
CDX98158	Canola	plastid	33.68	36.33
CDX90218	Canola	plastid	33.68	36.33
CDY17250	Canola	mitochondrion, plastid	19.79	34.97
CDY43936	Canola	plastid	30.56	34.38
CDX89120	Canola	plastid	29.86	33.59
CDY51572	Canola	plastid	30.21	33.59
CDX83966	Canola	plastid	26.39	33.33
CDY33376	Canola	plastid	29.86	33.33
CDX93077	Canola	plastid	30.56	33.21
CDY15050	Canola	plastid	30.56	33.21
CDX81735	Canola	plastid	29.86	33.2
CDY52865	Canola	plastid	29.86	33.2
CDY35042	Canola	plastid	29.51	32.95
CDY17055	Canola	mitochondrion, plastid	29.51	32.95
CDY43213	Canola	mitochondrion, plastid	29.51	32.95
CDY18320	Canola	plastid	26.39	32.48
CDY14320	Canola	plastid	26.39	32.48
CDY20039	Canola	plastid	29.86	32.45
CDY49770	Canola	plastid	29.86	32.33
CDX96677	Canola	plastid	29.86	32.33
CDY00149	Canola	plastid	29.86	32.33
CDX83726	Canola	plastid	29.86	32.33
CDY13732	Canola	plastid	29.86	32.33
CDX83783	Canola	plastid	29.86	32.33
CDX96833	Canola	plastid	28.82	32.05
CDY03989	Canola	plastid	29.51	31.95
CDY52238	Canola	plastid	25.69	31.62
CDY57375	Canola	plastid	29.51	31.37
CDY12903	Canola	plastid	29.51	31.37
CDX90755	Canola	plastid	30.21	31.07
CDY05098	Canola	plastid	29.86	30.71
CDY15020	Canola	plastid	28.82	30.63
CDY60092	Canola	plastid	29.86	30.61
CDY03835	Canola	plastid	28.82	30.4
CDY47581	Canola	plastid	28.82	30.4
CDY26347	Canola	plastid	26.39	29.8
CDX84315	Canola	plastid	34.03	29.79
CDY20401	Canola	plastid	31.6	27.83
CDY45980	Canola	plastid	30.56	27.16
CDY28778	Canola	plastid	23.96	26.95
CDX86864	Canola	plastid	18.75	25.84

Protein Annotations

MapMan:1.1.1.1.2	Gene3D:1.10.3460.10	GO:A0A078I3N7	UniProt:A0A078I3N7	EnsemblPlants:CDY44667	ProteinID:CDY44667
ProteinID:CDY44667.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00080643001	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF6	SUPFAM:SSF103511	UniParc:UPI0000E64EC1	SEG:seg

Description

BnaA05g29390DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078I3N7]

Coordinates

chrLK032599:+:3510..4674

Molecular Weight (calculated)

31116.0 Da

IEP (calculated)

5.727

GRAVY (calculated)

-0.065

Length

288 amino acids

Sequence
(BLAST)

001: MAATSTAAAA SSIMGTRVVS DINSGSSRFT ARFGFGTKKA AAPKKAKTVI SDRPLWFPGA KSPEYLDGSL VGDYGFDPFG LGKPAEYLQF DLDSLDQNLA
101: KNIAGDVIGT RTEAADPKST PFQPYSEVFG LQRFRECELI HGRWAMLATL GALSVEWLTG VTWQDAGKVE LVDGSSYLGQ PLPFSISTLI WIEVLVIGYI
201: EFQRNAELDS EKRLYPGGKF FDPLGLASDP EKKAQLQLAE IKHARLAMVA FLGFAVQAAA TGKGPLNNWA THLSDPLHTT IIDTFSSS

Best Arabidopsis Sequence Match ( AT3G08940.2 )
(BLAST)

001: MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS

Arabidopsis Description

LHCB4.2Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XF88]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.