CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014048.1-P	Field mustard	mitochondrion, plastid	98.45	98.45
CDY17055	Canola	mitochondrion, plastid	98.06	98.06
AT1G45474.2	Thale cress	mitochondrion	85.66	86.33
VIT_18s0001g10550.t01	Wine grape	plastid	70.16	68.56
Solyc07g022900.2.1	Tomato	plastid	69.38	68.32
TraesCS6D01G299200.1	Wheat	plastid	63.18	64.17
KRH51989	Soybean	nucleus	70.54	63.86
Os02t0764500-01	Rice	plastid	64.34	63.6
TraesCS6B01G350500.1	Wheat	plastid	63.18	63.42
TraesCS6A01G319700.1	Wheat	plastid	62.4	63.39
GSMUA_Achr7P13020_001	Banana	plastid	65.89	62.5
Zm00001d018157_P001	Maize	plastid	64.73	62.08
EES07574	Sorghum	plastid	63.95	62.03
PGSC0003DMT400011381	Potato	plastid	57.75	56.02
TraesCS6B01G312900.1	Wheat	plastid	30.23	53.79
KRH61286	Soybean	mitochondrion	41.86	49.32
CDY47410	Canola	plastid	41.47	42.46
CDX99044	Canola	plastid	41.47	42.46
CDY43936	Canola	plastid	39.53	39.84
CDX89120	Canola	plastid	39.53	39.84
CDX83967	Canola	extracellular, vacuole	3.49	39.13
CDY51572	Canola	plastid	39.15	39.0
CDY66572	Canola	cytosol, extracellular, plastid	19.77	35.66
CDX96677	Canola	plastid	36.43	35.34
CDX83783	Canola	plastid	36.43	35.34
CDY26347	Canola	plastid	34.88	35.29
CDY57375	Canola	plastid	36.43	34.69
CDY12903	Canola	plastid	36.43	34.69
CDX67613	Canola	plastid	32.17	34.44
CDX73435	Canola	plastid	32.17	34.44
CDX78277	Canola	plastid	32.17	34.44
CDY07517	Canola	plastid	32.17	34.44
CDY03835	Canola	plastid	36.43	34.43
CDY47581	Canola	plastid	36.43	34.43
CDY30369	Canola	plastid	20.16	34.21
CDY15020	Canola	plastid	35.66	33.95
CDY33376	Canola	plastid	33.33	33.33
CDY35042	Canola	plastid	32.95	32.95
CDY52865	Canola	plastid	32.95	32.82
CDX81735	Canola	plastid	32.95	32.82
CDX96833	Canola	plastid	32.56	32.43
CDY17250	Canola	mitochondrion, plastid	20.16	31.9
CDY05098	Canola	plastid	33.33	30.71
CDX90755	Canola	plastid	33.33	30.71
CDY18320	Canola	plastid	27.52	30.34
CDY52238	Canola	plastid	27.52	30.34
CDY14320	Canola	plastid	27.52	30.34
CDY60092	Canola	plastid	32.95	30.25
CDY44667	Canola	plastid	32.95	29.51
CDY53084	Canola	plastid	32.95	29.41
CDX79562	Canola	plastid	30.23	29.32
CDX84316	Canola	plastid	30.23	29.32
CDX84647	Canola	plastid	30.23	29.32
CDY17248	Canola	plastid	30.23	29.32
CDY17247	Canola	plastid	30.23	29.32
CDY35271	Canola	plastid	30.23	29.21
CDX90218	Canola	plastid	30.23	29.21
CDY26306	Canola	plastid	30.23	29.21
CDX99866	Canola	plastid	30.23	29.21
CDY66768	Canola	plastid	30.23	29.21
CDY43676	Canola	plastid	30.23	29.21
CDY15050	Canola	plastid	29.84	29.06
CDY43198	Canola	plastid	29.84	28.84
CDX98158	Canola	plastid	29.84	28.84
CDX93077	Canola	plastid	29.46	28.68
CDY04834	Canola	plastid	31.78	28.57
CDY20039	Canola	plastid	29.07	28.3
CDX83726	Canola	plastid	29.07	28.2
CDY13732	Canola	plastid	29.07	28.2
CDY00149	Canola	plastid	29.07	28.2
CDY03989	Canola	plastid	29.07	28.2
CDY49770	Canola	plastid	29.07	28.2
CDX83966	Canola	plastid	24.81	28.07
CDX74808	Canola	plastid	28.68	26.81
CDY20518	Canola	plastid	27.91	26.09
CDY45980	Canola	plastid	32.56	25.93
CDY20401	Canola	plastid	32.56	25.69
CDY28778	Canola	plastid	24.03	24.22
CDX84315	Canola	plastid	30.62	24.01
CDX86864	Canola	plastid	19.38	23.92
CDY61708	Canola	plastid	21.32	15.71

Protein Annotations

MapMan:1.1.4.1.5	Gene3D:1.10.3460.10	GO:A0A078I271	UniProt:A0A078I271	EnsemblPlants:CDY43213	ProteinID:CDY43213
ProteinID:CDY43213.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00076226001	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF23	SUPFAM:SSF103511	UniParc:UPI0004EF203A	SEG:seg

Description

BnaC08g04860DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078I271]

Coordinates

chrLK032549:-:26209..27599

Molecular Weight (calculated)

27900.8 Da

IEP (calculated)

8.800

GRAVY (calculated)

0.078

Length

258 amino acids

Sequence
(BLAST)

001: MSVFLRGGIA GGFHLRSRDS SAVITKRRIS SVGAVTGRSV NPASAIEQRA TWLPGLEPPP YLDGKLAGDY GFDPLGLGED PKSLKWYVQA ELVHARFAML
101: GVAGILFTDL LRTTGISNLP VWYEAGATKF DFASTKTLIV VQFLLMGFAE TKRYMDFVSP GSQAAEGTFF GLEAALEGLE PGYPGGPLLN PLGLAKDIKS
201: AHDWKLKEIK NGRLAMMAML GFFVQASVTH TGPIDNLVEH LSNPWHKTII QTLFTSAS

Best Arabidopsis Sequence Match ( AT1G45474.2 )
(BLAST)

001: MAVVLRGGIT GGFLHHRRDA SSVITRRISS VKAAGGGINP TVAVERATWL PGLNPPPYLD GNLAGDYGFD PLGLGEDPES LKWYVQAELV HSRFAMLGVA
101: GILFTDLLRT TGIRNLPVWY EAGAVKFDFA STKTLIVVQF LLMGFAETKR YMDFVSPGSQ AKEGSFFFGL EAALEGLEPG YPGGPLLNPL GLAKDVQNAH
201: DWKLKEIKNG RLAMMAMLGF FVQASVTHTG PIDNLVEHLS NPWHKTIIQT LFTSTS

Arabidopsis Description

LHCA5Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C639]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.