CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014433.1-P	Field mustard	plastid	100.0	100.0
CDY43936	Canola	plastid	98.83	98.83
PGSC0003DMT400037285	Potato	extracellular, vacuole	58.59	96.15
AT3G61470.1	Thale cress	plastid	95.31	94.94
CDY51572	Canola	plastid	93.36	92.28
Solyc10g006230.2.1	Tomato	plastid	86.33	81.85
VIT_01s0010g03620.t01	Wine grape	plastid	85.94	81.18
TraesCS2D01G200700.1	Wheat	plastid	80.47	80.78
TraesCS2B01G220100.1	Wheat	golgi, plastid	80.47	80.78
TraesCS2A01G187200.1	Wheat	plastid	80.47	80.16
KRH06319	Soybean	nucleus, plastid	84.38	80.0
Zm00001d006663_P001	Maize	plastid	80.86	79.62
KXG36552	Sorghum	plastid	81.25	79.09
Os07t0577600-01	Rice	plastid	80.86	78.71
GSMUA_Achr6P20660_001	Banana	mitochondrion	61.72	77.07
Zm00001d021906_P001	Maize	plastid	80.47	76.3
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	71.48	73.49
KRH47742	Soybean	nucleus	80.47	73.05
HORVU2Hr1G036960.4	Barley	plastid	78.91	71.63
KRH68993	Soybean	plastid	80.86	67.21
AT5G28450.1	Thale cress	plastid	44.53	65.9
CDX83783	Canola	plastid	56.25	54.14
CDX96677	Canola	plastid	55.86	53.76
CDX99044	Canola	plastid	48.44	49.21
CDY47410	Canola	plastid	48.44	49.21
CDY17055	Canola	mitochondrion, plastid	40.23	39.92
CDY66572	Canola	cytosol, extracellular, plastid	22.27	39.86
CDY43213	Canola	mitochondrion, plastid	39.84	39.53
CDX67613	Canola	plastid	36.72	39.0
CDY07517	Canola	plastid	36.72	39.0
CDX78277	Canola	plastid	36.72	39.0
CDX73435	Canola	plastid	36.72	39.0
CDY12903	Canola	plastid	40.62	38.38
CDY57375	Canola	plastid	40.62	38.38
CDY47581	Canola	plastid	40.62	38.1
CDY03835	Canola	plastid	40.62	38.1
CDY26347	Canola	plastid	37.89	38.04
CDY15020	Canola	plastid	40.23	38.01
CDY30369	Canola	plastid	22.27	37.5
CDY26306	Canola	plastid	37.11	35.58
CDY66768	Canola	plastid	36.72	35.21
CDX90218	Canola	plastid	36.72	35.21
CDY43676	Canola	plastid	36.72	35.21
CDY35271	Canola	plastid	36.72	35.21
CDX99866	Canola	plastid	36.72	35.21
CDX79562	Canola	plastid	36.33	34.96
CDX84316	Canola	plastid	36.33	34.96
CDY17248	Canola	plastid	36.33	34.96
CDX84647	Canola	plastid	36.33	34.96
CDY17247	Canola	plastid	36.33	34.96
CDX98158	Canola	plastid	36.33	34.83
CDY52238	Canola	plastid	31.64	34.62
CDY33376	Canola	plastid	34.77	34.5
CDY43198	Canola	plastid	35.94	34.46
CDY17250	Canola	mitochondrion, plastid	21.88	34.36
CDY35042	Canola	plastid	34.38	34.11
CDX81735	Canola	plastid	34.38	33.98
CDY52865	Canola	plastid	34.38	33.98
CDY14320	Canola	plastid	30.86	33.76
CDY18320	Canola	plastid	30.86	33.76
CDX96833	Canola	plastid	33.98	33.59
CDX93077	Canola	plastid	32.42	31.32
CDY15050	Canola	plastid	32.42	31.32
CDY20039	Canola	plastid	32.42	31.32
CDY03989	Canola	plastid	32.42	31.2
CDY00149	Canola	plastid	32.42	31.2
CDY49770	Canola	plastid	32.42	31.2
CDY13732	Canola	plastid	32.42	31.2
CDX83726	Canola	plastid	32.42	31.2
CDX83966	Canola	plastid	27.73	31.14
CDY20518	Canola	plastid	33.2	30.8
CDX90755	Canola	plastid	33.59	30.71
CDY05098	Canola	plastid	33.59	30.71
CDX74808	Canola	plastid	32.81	30.43
CDX83967	Canola	extracellular, vacuole	2.73	30.43
CDY60092	Canola	plastid	32.81	29.89
CDY44667	Canola	plastid	33.59	29.86
CDY53084	Canola	plastid	33.59	29.76
CDY04834	Canola	plastid	33.2	29.62
CDX84315	Canola	plastid	35.55	27.66
CDY28778	Canola	plastid	26.95	26.95
CDX86864	Canola	plastid	21.48	26.32
CDY45980	Canola	plastid	32.03	25.31
CDY20401	Canola	plastid	32.03	25.08
CDY61708	Canola	plastid	25.78	18.86

Protein Annotations

MapMan:1.1.4.1.2	Gene3D:1.10.3460.10	GO:A0A078DIV3	EnsemblPlants:CDX89120	ProteinID:CDX89120	ProteinID:CDX89120.1
InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00149261001	InterPro:IPR023329	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF57	SUPFAM:SSF103511	UniParc:UPI0002543843	SEG:seg	:

Description

BnaA04g00660D

Coordinates

chrLK031857:+:1151139..1152726

Molecular Weight (calculated)

27607.2 Da

IEP (calculated)

7.505

GRAVY (calculated)

0.058

Length

256 amino acids

Sequence
(BLAST)

001: MASLCASSAI AAISSPSFLC GKKLRLNKKL SVAAVSKSAA SVRAVAADPE RPIWFPGSTP PEWLDGSLPG DFGFDPLGLS SDPDSLKWNV QAEIVHCRWA
101: MLGAAGIFIP EFLTKIGILN TPSWYTAGEQ EYFTDKTTLF VVELILIGWA EGRRWADIIK PGSVNTDPIF PNNKLTGTDV GYPGGLWFDP LGWGSGSPAK
201: IKELRTKEIK NGRLAMLAVM GAWFQHIYTG TGPIDNLFAH LADPGHATIF AAFTPK

Best Arabidopsis Sequence Match ( AT3G61470.1 )
(BLAST)

001: MASSLCASSA IAAISSPSFL GGKKLRLKKK LTVPAVSRPD ASVRAVAADP DRPIWFPGST PPEWLDGSLP GDFGFDPLGL SSDPDSLKWN VQAEIVHCRW
101: AMLGAAGIFI PEFLTKIGIL NTPSWYTAGE QEYFTDKTTL FVVELILIGW AEGRRWADII KPGSVNTDPV FPNNKLTGTD VGYPGGLWFD PLGWGSGSPA
201: KLKELRTKEI KNGRLAMLAV MGAWFQHIYT GTGPIDNLFA HLADPGHATI FAAFTPK

Arabidopsis Description

LHCA2Photosystem I chlorophyll a/b-binding protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SYW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.