Factsheet for Solyc10g006230.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 15248779
plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 15248779 doi

S Storf, EJ Stauber, M Hippler, VH Schmid

Institut für Allgemeine Botanik, Johannes Gutenberg-Universität Mainz, Müllerweg 6, 55099 Mainz, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037285	Potato	extracellular, vacuole	57.78	100.0
KRH06319	Soybean	nucleus, plastid	89.26	89.26
CDY43936	Canola	plastid	82.59	87.11
Bra014433.1-P	Field mustard	plastid	81.85	86.33
CDX89120	Canola	plastid	81.85	86.33
AT3G61470.1	Thale cress	plastid	81.48	85.6
Bra003451.1-P	Field mustard	plastid	81.85	85.33
CDY51572	Canola	plastid	81.48	84.94
VIT_01s0010g03620.t01	Wine grape	plastid	84.44	84.13
TraesCS2B01G220100.1	Wheat	golgi, plastid	78.52	83.14
TraesCS2D01G200700.1	Wheat	plastid	78.52	83.14
TraesCS2A01G187200.1	Wheat	plastid	78.52	82.49
Os07t0577600-01	Rice	plastid	80.0	82.13
KXG36552	Sorghum	plastid	78.89	80.99
GSMUA_Achr6P20660_001	Banana	mitochondrion	61.48	80.98
Zm00001d006663_P001	Maize	plastid	77.78	80.77
KRH47742	Soybean	nucleus	83.7	80.14
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	72.22	78.31
Zm00001d021906_P001	Maize	plastid	77.78	77.78
HORVU2Hr1G036960.4	Barley	plastid	77.04	73.76
KRH68993	Soybean	plastid	82.59	72.4
AT5G28450.1	Thale cress	plastid	42.59	66.47
Solyc12g009200.1.1	Tomato	nucleus, plastid	55.93	58.08
Solyc06g069730.2.1	Tomato	plastid	45.19	48.8
Solyc03g115900.2.1	Tomato	plastid	45.19	48.61
Solyc08g067320.1.1	Tomato	plastid	15.93	47.25
Solyc07g022900.2.1	Tomato	plastid	40.0	41.22
Solyc10g007690.2.1	Tomato	plastid	40.37	39.93
Solyc05g056050.2.1	Tomato	plastid	35.93	39.43
Solyc05g056070.2.1	Tomato	plastid	35.56	39.02
Solyc12g011280.1.1	Tomato	plastid	38.15	37.73
Solyc02g070980.1.1	Tomato	nucleus, plastid	34.44	35.09
Solyc02g071030.1.1	Tomato	plastid	34.07	34.72
Solyc02g070940.1.1	Tomato	plastid	34.07	34.72
Solyc02g070950.1.1	Tomato	plastid	34.07	34.72
Solyc02g071010.1.1	Tomato	plastid	34.07	34.72
Solyc02g070970.1.1	Tomato	plastid	34.07	34.72
Solyc03g005780.1.1	Tomato	plastid	34.07	34.46
Solyc03g005770.1.1	Tomato	nucleus	34.07	34.46
Solyc02g070990.1.1	Tomato	plastid	33.7	34.34
Solyc03g005760.1.1	Tomato	nucleus	33.7	34.08
Solyc02g071000.1.1	Tomato	nucleus, plastid	33.33	33.96
Solyc01g105050.2.1	Tomato	plastid	31.85	33.59
Solyc01g105030.2.1	Tomato	plastid	31.48	33.2
Solyc12g006140.1.1	Tomato	plastid	32.22	32.83
Solyc07g047850.2.1	Tomato	plastid	31.48	32.08
Solyc09g014520.2.1	Tomato	plastid	33.33	31.58
Solyc06g063370.2.1	Tomato	plastid	33.33	31.47
Solyc12g011450.1.1	Tomato	plastid	30.37	30.94
Solyc07g063600.2.1	Tomato	nucleus	30.0	30.92
Solyc08g067330.1.1	Tomato	plastid	10.0	27.55
Solyc04g082920.2.1	Tomato	plastid	16.67	20.64

Protein Annotations

MapMan:1.1.4.1.2	Gene3D:1.10.3460.10	ProteinID:AAA34159.1	ProteinID:CAA32197.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
GO:GO:0031409	GO:GO:0046872	InterPro:IPR023329	UniProt:P10708	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF57	SUPFAM:SSF103511	EnsemblPlantsGene:Solyc10g006230.2	EnsemblPlants:Solyc10g006230.2.1	UniParc:UPI0000127103	:

Description

CAB7Chlorophyll a-b binding protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10708]

Coordinates

chr10:+:920027..923670

Molecular Weight (calculated)

29047.7 Da

IEP (calculated)

7.962

GRAVY (calculated)

-0.025

Length

270 amino acids

Sequence
(BLAST)

001: MASACASSTI AAVAFSSPSS RRNGSIVGTT KASFLGGRRL RVSKYSTTPT ARSATTVCVA ADPDRPLWFP GSTPPPWLDG SLPGDFGFDP LGLASDPESL
101: RWNQQAELVH CRWAMLGAAG IFIPELLTKI GILNTPSWYT AGEQEYFTDT TTLFIVELVL IGWAEGRRWA DIIKPGCVNT DPIFPNNKLT GTDVGYPGGL
201: WFDPLGWGSG SPAKIKELRT KEIKNGRLAM LAVMGAWFQH IYTGTGPIDN LFAHLADPGH ATIFAAFSPK

Best Arabidopsis Sequence Match ( AT3G61470.1 )
(BLAST)

001: MASSLCASSA IAAISSPSFL GGKKLRLKKK LTVPAVSRPD ASVRAVAADP DRPIWFPGST PPEWLDGSLP GDFGFDPLGL SSDPDSLKWN VQAEIVHCRW
101: AMLGAAGIFI PEFLTKIGIL NTPSWYTAGE QEYFTDKTTL FVVELILIGW AEGRRWADII KPGSVNTDPV FPNNKLTGTD VGYPGGLWFD PLGWGSGSPA
201: KLKELRTKEI KNGRLAMLAV MGAWFQHIYT GTGPIDNLFA HLADPGHATI FAAFTPK

Arabidopsis Description

LHCA2Photosystem I chlorophyll a/b-binding protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SYW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.