Factsheet for TraesCS2D01G200700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22056444

msms PMID: 22056444 doi

Q Meng, L Rao, X Xiang, C Zhou, X Zhang, Y Pan

College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G220100.1	Wheat	golgi, plastid	99.61	99.61
TraesCS2A01G187200.1	Wheat	plastid	99.61	98.83
PGSC0003DMT400037285	Potato	extracellular, vacuole	57.65	94.23
HORVU2Hr1G036960.4	Barley	plastid	97.25	87.94
Os07t0577600-01	Rice	plastid	90.2	87.45
Zm00001d006663_P001	Maize	plastid	89.02	87.31
KXG36552	Sorghum	plastid	89.8	87.07
Zm00001d021906_P001	Maize	plastid	89.02	84.07
CDY43936	Canola	plastid	81.57	81.25
CDX89120	Canola	plastid	80.78	80.47
Bra014433.1-P	Field mustard	plastid	80.78	80.47
AT3G61470.1	Thale cress	plastid	80.0	79.38
KRH06319	Soybean	nucleus, plastid	83.53	78.89
Solyc10g006230.2.1	Tomato	plastid	83.14	78.52
VIT_01s0010g03620.t01	Wine grape	plastid	82.75	77.86
Bra003451.1-P	Field mustard	plastid	78.82	77.61
CDY51572	Canola	plastid	78.04	76.83
GSMUA_Achr6P20660_001	Banana	mitochondrion	61.57	76.59
KRH47742	Soybean	nucleus	80.39	72.69
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	70.59	72.29
KRH68993	Soybean	plastid	80.78	66.88
AT5G28450.1	Thale cress	plastid	41.18	60.69
TraesCS5D01G219100.1	Wheat	plastid	57.65	53.45
TraesCS5D01G238300.1	Wheat	mitochondrion, plastid	45.49	47.35
TraesCS6D01G299200.1	Wheat	plastid	41.96	42.13
TraesCS6D01G152700.1	Wheat	golgi	41.57	39.41
TraesCS7D01G227300.1	Wheat	plastid	35.69	37.14
TraesCS2D01G320900.1	Wheat	plastid	36.86	36.86
TraesCS6D01G088700.1	Wheat	plastid	32.55	36.09
TraesCS5D01G464700.1	Wheat	plastid	36.86	35.34
TraesCS5D01G464900.1	Wheat	plastid	36.47	34.96
TraesCS5D01G357600.1	Wheat	plastid	35.69	34.34
TraesCS5D01G464800.1	Wheat	plastid	35.69	34.21
TraesCS1D01G411600.1	Wheat	plastid	35.69	34.21
TraesCS1D01G306200.1	Wheat	plastid	34.9	33.84
TraesCS1D01G411300.1	Wheat	plastid	35.29	33.83
TraesCS7D01G276300.1	Wheat	plastid	34.51	33.72
TraesCS2D01G209900.1	Wheat	plastid	37.65	33.57
TraesCS6D01G088800.1	Wheat	plastid	34.9	33.46
TraesCS7D01G199400.1	Wheat	plastid	34.9	33.46
TraesCS1D01G375100.1	Wheat	plastid	34.51	33.21
TraesCS1D01G374900.1	Wheat	plastid	34.51	33.21
TraesCS6D01G088600.1	Wheat	plastid	34.51	33.08
TraesCS7D01G199500.1	Wheat	plastid	34.12	32.71
TraesCS1D01G428200.1	Wheat	plastid	33.73	32.09
TraesCS5D01G329200.1	Wheat	plastid	32.94	31.94
TraesCS1D01G375000.1	Wheat	plastid	29.02	30.96
TraesCS4D01G086400.1	Wheat	plastid	33.73	30.07
TraesCS1D01G375200.1	Wheat	plastid	16.86	27.92
TraesCS5D01G182000.1	Wheat	plastid	33.33	27.42

Protein Annotations

EnsemblPlants:TraesCS2D01G200700.1	EnsemblPlantsGene:TraesCS2D01G200700	Gene3D:1.10.3460.10	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	InterPro:IPR023329	PANTHER:PTHR21649	PANTHER:PTHR21649:SF57	PFAM:PF00504
SEG:seg	SUPFAM:SSF103511	MapMan:1.1.4.1.2	:	:	:

Description

No Description!

Coordinates

chr2D:-:152627484..152628812

Molecular Weight (calculated)

27240.5 Da

IEP (calculated)

5.731

GRAVY (calculated)

0.027

Length

255 amino acids

Sequence
(BLAST)

001: MALVSSSSAT AVAALPSNGL AGARSSFLGA AGKAAGSRAS FAVRAAAPER PIWFPGSTPP PWLDGSLPGD FGFDPWGLGS DPESLRWNVQ AELVHCRWAM
101: LGAAGIFIPE LLTKIGILNT PSWYTAGEQE YFTDTTTLFI VELILIGWAE GRRWADIIKP GCVNTDPIFP NNKLTGTDVG YPGGLWFDPL GYGTGSPEKL
201: KELRTKEIKN GRLAMLAVMG AWFQAEYTGT GPIDNLFAHL ADPGHATIFR AFAPK

Best Arabidopsis Sequence Match ( AT3G61470.1 )
(BLAST)

001: MASSLCASSA IAAISSPSFL GGKKLRLKKK LTVPAVSRPD ASVRAVAADP DRPIWFPGST PPEWLDGSLP GDFGFDPLGL SSDPDSLKWN VQAEIVHCRW
101: AMLGAAGIFI PEFLTKIGIL NTPSWYTAGE QEYFTDKTTL FVVELILIGW AEGRRWADII KPGSVNTDPV FPNNKLTGTD VGYPGGLWFD PLGWGSGSPA
201: KLKELRTKEI KNGRLAMLAV MGAWFQHIYT GTGPIDNLFA HLADPGHATI FAAFTPK

Arabidopsis Description

LHCA2Photosystem I chlorophyll a/b-binding protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SYW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.