CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037285	Potato	extracellular, vacuole	46.43	91.67
KRH06319	Soybean	nucleus, plastid	76.62	87.41
Solyc10g006230.2.1	Tomato	plastid	72.4	82.59
Bra003451.1-P	Field mustard	plastid	68.51	81.47
CDY51572	Canola	plastid	68.18	81.08
Bra014433.1-P	Field mustard	plastid	67.21	80.86
CDX89120	Canola	plastid	67.21	80.86
CDY43936	Canola	plastid	67.21	80.86
TraesCS2D01G200700.1	Wheat	plastid	66.88	80.78
TraesCS2B01G220100.1	Wheat	golgi, plastid	66.56	80.39
TraesCS2A01G187200.1	Wheat	plastid	66.56	79.77
Os07t0577600-01	Rice	plastid	67.86	79.47
AT3G61470.1	Thale cress	plastid	66.23	79.38
VIT_01s0010g03620.t01	Wine grape	plastid	69.81	79.34
KRH47742	Soybean	nucleus	71.75	78.37
Zm00001d006663_P001	Maize	plastid	65.58	77.69
KXG36552	Sorghum	plastid	65.91	77.19
GSMUA_Achr6P20660_001	Banana	mitochondrion	50.32	75.61
Zm00001d021906_P001	Maize	plastid	66.23	75.56
GSMUA_Achr9P01470_001	Banana	endoplasmic reticulum	58.77	72.69
HORVU2Hr1G036960.4	Barley	plastid	65.26	71.28
AT5G28450.1	Thale cress	plastid	33.77	60.12
KRH37524	Soybean	plastid	48.05	56.92
KRH12566	Soybean	plastid	48.05	56.92
KRH63318	Soybean	plastid	37.66	46.03
KRH54568	Soybean	nucleus, plastid	37.66	46.03
KRH08384	Soybean	nucleus, plastid	30.52	38.21
KRH70044	Soybean	mitochondrion, nucleus, plastid	30.52	38.21
KRH74072	Soybean	mitochondrion, nucleus, plastid	33.77	37.68
KRH14048	Soybean	nucleus, plastid	33.77	37.68
KRH51989	Soybean	nucleus	34.74	37.54
KRH08634	Soybean	endoplasmic reticulum	14.29	35.48
KRH58296	Soybean	plastid	26.3	33.33
KRH08669	Soybean	nucleus, plastid	27.92	32.58
KRH58441	Soybean	mitochondrion, plastid	27.6	32.32
KRH08676	Soybean	nucleus, plastid	27.6	32.2
KRH08672	Soybean	mitochondrion, nucleus, plastid	27.6	32.2
KRH42185	Soybean	mitochondrion, nucleus, plastid	26.95	32.17
KRH42317	Soybean	mitochondrion, nucleus, plastid	27.27	31.94
KRH10515	Soybean	mitochondrion, nucleus, plastid	26.95	31.92
KRH43915	Soybean	mitochondrion, nucleus, plastid	26.95	31.8
KRH74003	Soybean	nucleus, plastid	26.3	30.57
KRH70280	Soybean	plastid	24.68	30.52
KRH14122	Soybean	nucleus, plastid	25.97	30.19
KRH09238	Soybean	mitochondrion, nucleus, plastid	28.25	30.1
KRH38736	Soybean	nucleus, plastid	28.25	29.9
KRH27171	Soybean	mitochondrion, nucleus, plastid	25.97	29.85
KRH61286	Soybean	mitochondrion	21.1	29.68
KRH75874	Soybean	mitochondrion, nucleus, plastid	27.92	29.66
KRH65776	Soybean	nucleus, plastid	27.92	29.66
KRH22164	Soybean	nucleus, plastid	25.65	29.59
KRH34336	Soybean	plastid	27.27	29.27
KRG92462	Soybean	nucleus, plastid	27.27	29.17
KRG97750	Soybean	plastid	26.3	29.14
KRH31130	Soybean	nucleus, plastid	26.3	28.72
KRH06016	Soybean	plastid	26.62	24.7
KRH17548	Soybean	cytosol, peroxisome, plastid	15.58	23.76
KRH58809	Soybean	mitochondrion	18.51	17.98

Protein Annotations

MapMan:1.1.4.1.2	Gene3D:1.10.3460.10	EntrezGene:100794944	EMBL:ACUP02002129	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_03G262300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0031409	UniProt:I1JS58	InterPro:IPR023329	EnsemblPlants:KRH68993	ProteinID:KRH68993
ProteinID:KRH68993.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF57	SUPFAM:SSF103511	UniParc:UPI00023C0D01
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:45569851..45570938

Molecular Weight (calculated)

33403.0 Da

IEP (calculated)

7.819

GRAVY (calculated)

0.044

Length

308 amino acids

Sequence
(BLAST)

001: MASACASSAI TAVAISTPSS GQKNGSGGCF LSGRKLRVKK ERAAIGGRSM GTTVCAVAEP DRPLWFPGST PPPWLDGTLP GDFGFDPLGL GSDPESLRWN
101: VQAELVHCRW AMLGAAGIFI PEFLTKIGVL NTPSWYSAGE LEYFTDTTTL FIVELFFIGW AEGRRWADII KPGCVNTDPI FPNNKLTGTD VGYPGGLWFD
201: PLGWGTGSPQ KIKDLRTKEI KNGRLAMLAV MGAWFQHIYT ATGPIDNLFA HLADPGHATI FAVSLFITTT SYTNHSAFLF SYSLFLYYRL SPLSEKAKIN
301: NQITSCLG

Best Arabidopsis Sequence Match ( AT3G61470.1 )
(BLAST)

001: MASSLCASSA IAAISSPSFL GGKKLRLKKK LTVPAVSRPD ASVRAVAADP DRPIWFPGST PPEWLDGSLP GDFGFDPLGL SSDPDSLKWN VQAEIVHCRW
101: AMLGAAGIFI PEFLTKIGIL NTPSWYTAGE QEYFTDKTTL FVVELILIGW AEGRRWADII KPGSVNTDPV FPNNKLTGTD VGYPGGLWFD PLGWGSGSPA
201: KLKELRTKEI KNGRLAMLAV MGAWFQHIYT GTGPIDNLFA HLADPGHATI FAAFTPK

Arabidopsis Description

LHCA2Photosystem I chlorophyll a/b-binding protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SYW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.