CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G086800.1	Wheat	cytosol	72.58	91.84
Solyc08g067320.1.1	Tomato	plastid	66.94	91.21
CDY17250	Canola	mitochondrion, plastid	80.65	61.35
PGSC0003DMT400034894	Potato	plastid	91.94	58.46
KRH70280	Soybean	plastid	94.35	46.99
KRH42317	Soybean	mitochondrion, nucleus, plastid	98.39	46.39
KRH08669	Soybean	nucleus, plastid	98.39	46.21
KRH08672	Soybean	mitochondrion, nucleus, plastid	98.39	46.21
KRH08676	Soybean	nucleus, plastid	98.39	46.21
KRH58441	Soybean	mitochondrion, plastid	97.58	46.01
PGSC0003DMT400021390	Potato	plastid	92.74	44.23
PGSC0003DMT400021391	Potato	plastid	92.74	44.23
PGSC0003DMT400021392	Potato	plastid	92.74	44.23
PGSC0003DMT400034897	Potato	plastid	92.74	43.89
PGSC0003DMT400034892	Potato	plastid	92.74	43.89
PGSC0003DMT400034893	Potato	plastid	91.94	43.51
PGSC0003DMT400092927	Potato	plastid	92.74	43.4
PGSC0003DMT400021389	Potato	plastid	92.74	43.4
PGSC0003DMT400034898	Potato	plastid	91.13	43.13
PGSC0003DMT400034896	Potato	plastid	92.74	43.07
PGSC0003DMT400034899	Potato	plastid	92.74	43.07
PGSC0003DMT400043054	Potato	plastid	92.74	43.07
PGSC0003DMT400021422	Potato	plastid	91.94	43.02
KRH14122	Soybean	nucleus, plastid	85.48	40.0
KRH74003	Soybean	nucleus, plastid	85.48	40.0
PGSC0003DMT400022698	Potato	plastid	92.74	37.7
KRH22164	Soybean	nucleus, plastid	76.61	35.58
KRH27171	Soybean	mitochondrion, nucleus, plastid	76.61	35.45
PGSC0003DMT400019031	Potato	plastid	92.74	35.06
KRH70044	Soybean	mitochondrion, nucleus, plastid	43.55	21.95
KRH08384	Soybean	nucleus, plastid	42.74	21.54
KRH37524	Soybean	plastid	41.13	19.62
KRH12566	Soybean	plastid	41.13	19.62
KRH34336	Soybean	plastid	44.35	19.16
KRG92462	Soybean	nucleus, plastid	44.35	19.1
KRH09238	Soybean	mitochondrion, nucleus, plastid	44.35	19.03
KRH38736	Soybean	nucleus, plastid	44.35	18.9
KRH63318	Soybean	plastid	36.29	17.86
KRH54568	Soybean	nucleus, plastid	36.29	17.86
KRH06319	Soybean	nucleus, plastid	38.71	17.78
KRH06016	Soybean	plastid	47.58	17.77
KRH74072	Soybean	mitochondrion, nucleus, plastid	39.52	17.75
KRH14048	Soybean	nucleus, plastid	39.52	17.75
KRH58809	Soybean	mitochondrion	45.16	17.67
KRH65776	Soybean	nucleus, plastid	40.32	17.24
KRH75874	Soybean	mitochondrion, nucleus, plastid	40.32	17.24
KRH47742	Soybean	nucleus	38.71	17.02
KRH51989	Soybean	nucleus	36.29	15.79
KRG97750	Soybean	plastid	34.68	15.47
KRH31130	Soybean	nucleus, plastid	34.68	15.25
KRH17548	Soybean	cytosol, peroxisome, plastid	24.19	14.85
KRH68993	Soybean	plastid	35.48	14.29
KRH58296	Soybean	plastid	27.42	13.99
KRH43915	Soybean	mitochondrion, nucleus, plastid	29.03	13.79
KRH10515	Soybean	mitochondrion, nucleus, plastid	28.23	13.46
KRH42185	Soybean	mitochondrion, nucleus, plastid	27.42	13.18
KRH61286	Soybean	mitochondrion	10.48	5.94
Solyc08g067330.1.1	Tomato	plastid	0.0	0.0

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	UniProt:A0A0R0FRH0	EMBL:ACUP02010183	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_16G162600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	EnsemblPlants:KRH08634	ProteinID:KRH08634	ProteinID:KRH08634.1
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF25	SUPFAM:SSF103511	UniParc:UPI0006EDB8A0	:

Description

hypothetical protein

Coordinates

chr16:+:32154717..32155227

Molecular Weight (calculated)

13220.8 Da

IEP (calculated)

4.267

GRAVY (calculated)

0.154

Length

124 amino acids

Sequence
(BLAST)

001: DVDYLGNPSL IHAQSILAIW ATQVILMGAV EGYRIAGGPL GEVTDPIYPG GSFDPLGLAD DPEAFAELKV KELKNGRLAM FSMFGFFVQA IVTGKGPLEN
101: LADHLADPVN NNAWAYATNF VPGK

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.