CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08669	Soybean	nucleus, plastid	99.24	99.24
KRH08676	Soybean	nucleus, plastid	99.24	99.24
KRH08634	Soybean	endoplasmic reticulum	46.21	98.39
EER97145	Sorghum	extracellular, vacuole	62.12	95.91
KRH42317	Soybean	mitochondrion, nucleus, plastid	94.32	94.68
KRH58441	Soybean	mitochondrion, plastid	93.18	93.54
EER97143	Sorghum	plastid	89.02	89.69
EES18693	Sorghum	plastid	89.77	89.43
Os01t0600900-02	Rice	plastid	88.26	89.27
Zm00001d021435_P001	Maize	plastid	88.26	88.93
Zm00001d039040_P001	Maize	plastid	89.39	88.72
TraesCS5A01G454400.1	Wheat	mitochondrion, plastid	56.06	88.62
Zm00001d009589_P001	Maize	plastid	88.64	88.3
Os09t0346500-04	Rice	plastid	87.5	87.17
KRH70280	Soybean	plastid	80.68	85.54
KRH74003	Soybean	nucleus, plastid	77.65	77.36
KRH14122	Soybean	nucleus, plastid	76.89	76.6
KRH22164	Soybean	nucleus, plastid	68.56	67.79
KRH27171	Soybean	mitochondrion, nucleus, plastid	68.56	67.54
KRG92462	Soybean	nucleus, plastid	44.7	40.97
KRH34336	Soybean	plastid	44.32	40.77
KRH09238	Soybean	mitochondrion, nucleus, plastid	44.32	40.48
KRH38736	Soybean	nucleus, plastid	44.32	40.21
KRH70044	Soybean	mitochondrion, nucleus, plastid	35.98	38.62
KRH08384	Soybean	nucleus, plastid	35.23	37.8
KRH37524	Soybean	plastid	36.36	36.92
KRH12566	Soybean	plastid	35.61	36.15
KRH17548	Soybean	cytosol, peroxisome, plastid	27.65	36.14
KRH14048	Soybean	nucleus, plastid	35.61	34.06
KRH06016	Soybean	plastid	42.42	33.73
KRH74072	Soybean	mitochondrion, nucleus, plastid	35.23	33.7
KRH06319	Soybean	nucleus, plastid	33.33	32.59
KRH63318	Soybean	plastid	31.06	32.54
KRH54568	Soybean	nucleus, plastid	30.68	32.14
KRH75874	Soybean	mitochondrion, nucleus, plastid	34.47	31.38
KRH65776	Soybean	nucleus, plastid	34.47	31.38
KRH58296	Soybean	plastid	28.41	30.86
KRG97750	Soybean	plastid	31.44	29.86
KRH43915	Soybean	mitochondrion, nucleus, plastid	29.17	29.5
KRH47742	Soybean	nucleus	31.44	29.43
KRH10515	Soybean	mitochondrion, nucleus, plastid	28.79	29.23
KRH31130	Soybean	nucleus, plastid	31.06	29.08
KRH42185	Soybean	mitochondrion, nucleus, plastid	28.41	29.07
KRH51989	Soybean	nucleus	29.92	27.72
KRH68993	Soybean	plastid	32.2	27.6
KRH58809	Soybean	mitochondrion	29.17	24.29
KRH61286	Soybean	mitochondrion	15.53	18.72

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:547819	UniProt:A0A0R0FRF8	EMBL:ACUP02010192	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_16G165500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0046872	InterPro:IPR023329	EnsemblPlants:KRH08672
ProteinID:KRH08672	ProteinID:KRH08672.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF55	SUPFAM:SSF103511
UniParc:UPI0002081A1D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:32457671..32458673

Molecular Weight (calculated)

27996.4 Da

IEP (calculated)

5.065

GRAVY (calculated)

0.016

Length

264 amino acids

Sequence
(BLAST)

001: MAASTMALSS SSLAGQAIKL APSTPQLGVG RVSMRKTASK TVSSGSPWYG PDRVKYLGPF SGEPPSYLTG EFPGDYGWDT AGLSADPETF AKNRELEVIH
101: SRWAMLGALG CVFPELLARN GVKFGEAVWF KAGSQIFSEG GLDYLGNPSL IHAQSILAIW ATQVILMGAV EGYRIAGGPL GEVTDPIYPG GSFDPLGLAD
201: DPEAFAELKV KELKNGRLAM FSMFGFFVQA IVTGKGPLEN LADHLADPVN NNAWAYATNF VPGK

Best Arabidopsis Sequence Match ( AT2G34430.1 )
(BLAST)

001: MAASTMALSS PALTGKAVKL SPAASEVFGT GRITMRKASK PTGPSGSPWY GSDRVKYLGP FSGEPPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HSRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSD GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGDG PLGEAEDLLY PGGSFDPLGL
201: ATDPEAFAEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGK

Arabidopsis Description

LHB1B1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39142]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.