CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0122g00430.t01	Wine grape	plastid	78.92	79.15
PGSC0003DMT400025715	Potato	plastid	73.8	77.04
Bra008265.1-P	Field mustard	plastid	72.59	74.38
CDY45980	Canola	plastid	72.29	74.07
CDY20401	Canola	plastid	71.99	73.09
Solyc04g082920.2.1	Tomato	plastid	47.29	72.02
AT1G76570.1	Thale cress	plastid	70.48	71.56
EER96508	Sorghum	plastid	67.47	71.34
TraesCS5A01G177700.1	Wheat	plastid	65.66	70.32
GSMUA_Achr9P27480_001	Banana	mitochondrion	68.07	70.19
Zm00001d020002_P002	Maize	plastid	66.57	70.16
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	65.36	70.0
TraesCS5D01G182000.1	Wheat	plastid	65.36	70.0
TraesCS5B01G175000.1	Wheat	plastid	65.06	69.9
Os09t0296800-01	Rice	plastid	65.36	67.6
KRH17548	Soybean	cytosol, peroxisome, plastid	40.66	66.83
KRH08634	Soybean	endoplasmic reticulum	17.77	47.58
KRH08669	Soybean	nucleus, plastid	33.73	42.42
KRH08672	Soybean	mitochondrion, nucleus, plastid	33.73	42.42
KRH08676	Soybean	nucleus, plastid	33.73	42.42
KRH42317	Soybean	mitochondrion, nucleus, plastid	33.43	42.21
KRH58441	Soybean	mitochondrion, plastid	33.13	41.83
KRH14122	Soybean	nucleus, plastid	33.13	41.51
KRH74003	Soybean	nucleus, plastid	33.13	41.51
KRH22164	Soybean	nucleus, plastid	32.23	40.07
KRH27171	Soybean	mitochondrion, nucleus, plastid	32.23	39.93
KRH09238	Soybean	mitochondrion, nucleus, plastid	34.34	39.45
KRH38736	Soybean	nucleus, plastid	34.34	39.18
KRG92462	Soybean	nucleus, plastid	32.83	37.85
KRH34336	Soybean	plastid	32.53	37.63
KRH08384	Soybean	nucleus, plastid	27.71	37.4
KRH70044	Soybean	mitochondrion, nucleus, plastid	27.11	36.59
KRH70280	Soybean	plastid	26.81	35.74
KRH37524	Soybean	plastid	27.11	34.62
KRH12566	Soybean	plastid	26.81	34.23
KRH14048	Soybean	nucleus, plastid	28.31	34.06
KRH74072	Soybean	mitochondrion, nucleus, plastid	28.31	34.06
KRH63318	Soybean	plastid	24.4	32.14
KRH54568	Soybean	nucleus, plastid	24.4	32.14
KRH06319	Soybean	nucleus, plastid	25.3	31.11
KRH65776	Soybean	nucleus, plastid	27.11	31.03
KRH75874	Soybean	mitochondrion, nucleus, plastid	27.11	31.03
KRH58296	Soybean	plastid	21.08	28.81
KRH43915	Soybean	mitochondrion, nucleus, plastid	22.29	28.35
KRH42185	Soybean	mitochondrion, nucleus, plastid	21.99	28.29
KRH10515	Soybean	mitochondrion, nucleus, plastid	21.99	28.08
KRH47742	Soybean	nucleus	23.8	28.01
KRH51989	Soybean	nucleus	23.19	27.02
KRH68993	Soybean	plastid	24.7	26.62
KRG97750	Soybean	plastid	22.29	26.62
KRH31130	Soybean	nucleus, plastid	22.29	26.24
KRH58809	Soybean	mitochondrion	22.89	23.97
KRH61286	Soybean	mitochondrion	12.95	19.63

Protein Annotations

MapMan:1.1.1.1.5	Gene3D:1.10.3460.10	EntrezGene:100786260	EMBL:ACUP02010789	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_17G262400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009637	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941
GO:GO:0009987	GO:GO:0010218	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	UniProt:I1MY72	InterPro:IPR023329
EnsemblPlants:KRH06016	ProteinID:KRH06016	ProteinID:KRH06016.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF24
SUPFAM:SSF103511	UniParc:UPI00023DA40C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:41584155..41593164

Molecular Weight (calculated)

36622.3 Da

IEP (calculated)

6.875

GRAVY (calculated)

0.094

Length

332 amino acids

Sequence
(BLAST)

001: MVSLHPHTLT LACPLSVSSS SSRFLRCSVN SAPKRRRSSF ITASWQEQLA GVLLFSAIPF TAVKAIANSP LGESLQRKME ERKTFAVENS STFKALAGKA
101: RKESFWYGED RPRWLGPISY EYPSYLTGEL PGDYGFDIAG LGQDPVALQK YFNFEILHAR WAMLASVGAL IPEILDLLGA FHFVEPVWWR VGYSKLKGDT
201: LDYLGIQGLH FAGSQGVVVI AICQALLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGAL FDPLNLSNDP EAFEELKVKE IKNGRLAMVA WLGFYVQAAL
301: TGKGPVQNLI DHISDPFHNN LLGSLNFIKV VM

Best Arabidopsis Sequence Match ( AT1G76570.1 )
(BLAST)

001: MALFQEKLSS LSSSYSSIHS LPRILVSKPR NRIAVTKSRS ICRASWQELA GVLVFSAIPF TAVKAIANSS IGVSLRRRLE EKKKEAVENS SRFKSKAQEA
101: RNDSKWYGKE RPRWFGPIPY DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT FHFAEPVWWR VGYSKLQGET
201: LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPLHNN LIAMLQT

Arabidopsis Description

LHCB7Chlorophyll a-b binding protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.