Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 11
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
mitochondrion: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G01530.1 | KRH42483 | AT2G01950.1 | 19000166 |
| AT5G01530.1 | KRH58580 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH65776 | Soybean | nucleus, plastid | 97.93 | 97.93 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 47.59 | 94.52 |
| HORVU2Hr1G041270.2 | Barley | endoplasmic reticulum, plastid | 38.62 | 93.33 |
| Solyc09g014520.2.1 | Tomato | plastid | 89.66 | 91.23 |
| PGSC0003DMT400021871 | Potato | plastid | 89.31 | 90.88 |
| Bra029732.1-P | Field mustard | plastid | 86.21 | 86.81 |
| CDY44667 | Canola | plastid | 86.21 | 86.81 |
| CDY53084 | Canola | plastid | 85.86 | 86.16 |
| Bra028906.1-P | Field mustard | plastid | 85.17 | 85.76 |
| CDY04834 | Canola | plastid | 84.83 | 85.71 |
| AT3G08940.2 | Thale cress | plastid | 84.48 | 85.37 |
| EER99537 | Sorghum | plastid | 84.48 | 85.07 |
| Os07t0558400-01 | Rice | plasma membrane, plastid | 84.83 | 84.83 |
| Zm00001d006587_P001 | Maize | plastid | 84.83 | 84.54 |
| Zm00001d021763_P001 | Maize | plastid | 84.48 | 84.19 |
| AT5G01530.1 | Thale cress | plastid | 83.79 | 83.79 |
| TraesCS2D01G209900.1 | Wheat | plastid | 82.41 | 83.57 |
| TraesCS2B01G233400.1 | Wheat | plastid | 82.41 | 83.57 |
| TraesCS2A01G206200.1 | Wheat | plastid | 82.41 | 83.57 |
| KRG97750 | Soybean | plastid | 70.0 | 73.02 |
| VIT_08s0007g02190.t01 | Wine grape | plastid | 83.79 | 71.05 |
| KRH31130 | Soybean | nucleus, plastid | 68.62 | 70.57 |
| KRH08634 | Soybean | endoplasmic reticulum | 17.24 | 40.32 |
| KRH08384 | Soybean | nucleus, plastid | 33.1 | 39.02 |
| KRH70044 | Soybean | mitochondrion, nucleus, plastid | 33.1 | 39.02 |
| KRH54568 | Soybean | nucleus, plastid | 31.03 | 35.71 |
| KRH63318 | Soybean | plastid | 30.69 | 35.32 |
| KRH08672 | Soybean | mitochondrion, nucleus, plastid | 31.38 | 34.47 |
| KRH08676 | Soybean | nucleus, plastid | 31.38 | 34.47 |
| KRH08669 | Soybean | nucleus, plastid | 31.38 | 34.47 |
| KRH27171 | Soybean | mitochondrion, nucleus, plastid | 31.72 | 34.33 |
| KRH12566 | Soybean | plastid | 30.69 | 34.23 |
| KRH37524 | Soybean | plastid | 30.69 | 34.23 |
| KRH58441 | Soybean | mitochondrion, plastid | 31.03 | 34.22 |
| KRH22164 | Soybean | nucleus, plastid | 31.38 | 34.08 |
| KRH42317 | Soybean | mitochondrion, nucleus, plastid | 30.69 | 33.84 |
| KRH70280 | Soybean | plastid | 28.62 | 33.33 |
| KRH74003 | Soybean | nucleus, plastid | 30.34 | 33.21 |
| KRH14122 | Soybean | nucleus, plastid | 30.34 | 33.21 |
| KRH43915 | Soybean | mitochondrion, nucleus, plastid | 29.66 | 32.95 |
| KRH06319 | Soybean | nucleus, plastid | 30.34 | 32.59 |
| KRH10515 | Soybean | mitochondrion, nucleus, plastid | 28.97 | 32.31 |
| KRH58296 | Soybean | plastid | 26.9 | 32.1 |
| KRH42185 | Soybean | mitochondrion, nucleus, plastid | 27.59 | 31.01 |
| KRH47742 | Soybean | nucleus | 29.66 | 30.5 |
| KRH09238 | Soybean | mitochondrion, nucleus, plastid | 30.0 | 30.1 |
| KRH74072 | Soybean | mitochondrion, nucleus, plastid | 28.62 | 30.07 |
| KRH38736 | Soybean | nucleus, plastid | 30.0 | 29.9 |
| KRH14048 | Soybean | nucleus, plastid | 28.28 | 29.71 |
| KRH34336 | Soybean | plastid | 29.31 | 29.62 |
| KRG92462 | Soybean | nucleus, plastid | 29.31 | 29.51 |
| KRH51989 | Soybean | nucleus | 28.97 | 29.47 |
| KRH68993 | Soybean | plastid | 29.66 | 27.92 |
| KRH06016 | Soybean | plastid | 31.03 | 27.11 |
| KRH17548 | Soybean | cytosol, peroxisome, plastid | 17.93 | 25.74 |
| KRH61286 | Soybean | mitochondrion | 14.48 | 19.18 |
| KRH58809 | Soybean | mitochondrion | 20.0 | 18.3 |
Protein Annotations
| MapMan:1.1.1.1.2 | Gene3D:1.10.3460.10 | EntrezGene:100785180 | EMBL:ACUP02000516 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind |
| InterPro:Chlorophyll_a/b-bd_dom_sf | EnsemblPlantsGene:GLYMA_01G115900 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009416 | GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 |
| GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009765 | GO:GO:0009768 | GO:GO:0009941 | GO:GO:0009987 |
| GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 |
| GO:GO:0019538 | GO:GO:0031409 | UniProt:I1J7A8 | InterPro:IPR023329 | EnsemblPlants:KRH75874 | ProteinID:KRH75874 |
| ProteinID:KRH75874.1 | PFAM:PF00504 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF6 | SUPFAM:SSF103511 | UniParc:UPI00023374DD |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:40071787..40074567
Molecular Weight (calculated)
31325.2 Da
IEP (calculated)
6.041
GRAVY (calculated)
-0.109
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MATATAAATS SFMGTRLLEA HSGAGRVQAR FGFGKKKAAA PKKVSRGSGS SSDRPLWYPG AKAPEYLDGS LVGDYGFDPF GLGKPAEYLQ FELDSLDQNL
101: AKNVAGDIIG TRTELADVKS TPFQPYSEVF GLQRFRECEL IHGRWAMLAT LGALTVEWLT GVTWQDAGKV ELVEGSSYLG QPLPFSITTL IWIEVLVIGY
201: IEFQRNAELD PEKRLYPGGS YFDPLGLASD PEKKATLQLA EIKHARLAMV GFLGFAVQAA ATGKGPLNNW ATHLSDPLHT TIIDTFSSSS
101: AKNVAGDIIG TRTELADVKS TPFQPYSEVF GLQRFRECEL IHGRWAMLAT LGALTVEWLT GVTWQDAGKV ELVEGSSYLG QPLPFSITTL IWIEVLVIGY
201: IEFQRNAELD PEKRLYPGGS YFDPLGLASD PEKKATLQLA EIKHARLAMV GFLGFAVQAA ATGKGPLNNW ATHLSDPLHT TIIDTFSSSS
001: MAATSTAAAA SSIMGTRVVS DISSNSSRFT ARFGFGTKKA SPKKAKTVIS DRPLWFPGAK SPEYLDGSLV GDYGFDPFGL GKPAEYLQFD LDSLDQNLAK
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS
101: NLYGEVIGTR TEAVDPKSTP FQPYSEVFGL QRFRECELIH GRWAMLATLG AITVEWLTGV TWQDAGKVEL VDGSSYLGQP LPFSISTLIW IEVLVIGYIE
201: FQRNAELDSE KRLYPGGKFF DPLGLASDPV KKAQLQLAEI KHARLAMVGF LGFAVQAAAT GKGPLNNWAT HLSDPLHTTI IDTFSSS
Arabidopsis Description
LHCB4.2Chlorophyll a-b binding protein CP29.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XF88]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.