Factsheet for Os07t0558400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 19089317

plasma membrane: 18260611
plasma membrane: 18557835
vacuole: 18557835
nucleus: 19621931
plastid: 21433289
extracellular: 23159799
plasma membrane: 27800704
extracellular: 28232208

gfp PMID: 19089317 doi

CH Goh, S Jang, S Jung, HS Kim, HG Kang, YI Park, HJ Bae, CH Lee, G An

Environmental Biotechnology and Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01530.1	Os10t0114400-01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G041270.2	Barley	endoplasmic reticulum, plastid	39.31	95.0
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	46.55	92.47
Zm00001d021763_P001	Maize	plastid	91.72	91.41
EER99537	Sorghum	plastid	90.0	90.62
Zm00001d006587_P001	Maize	plastid	90.69	90.38
TraesCS2B01G233400.1	Wheat	plastid	88.62	89.86
TraesCS2A01G206200.1	Wheat	plastid	88.28	89.51
TraesCS2D01G209900.1	Wheat	plastid	88.28	89.51
KRH65776	Soybean	nucleus, plastid	85.17	85.17
KRH75874	Soybean	mitochondrion, nucleus, plastid	84.83	84.83
Bra029732.1-P	Field mustard	plastid	83.45	84.03
CDY44667	Canola	plastid	83.45	84.03
Solyc09g014520.2.1	Tomato	plastid	82.41	83.86
CDY53084	Canola	plastid	83.45	83.74
Bra028906.1-P	Field mustard	plastid	82.76	83.33
CDY04834	Canola	plastid	82.41	83.28
AT3G08940.2	Thale cress	plastid	81.72	82.58
AT5G01530.1	Thale cress	plastid	82.41	82.41
PGSC0003DMT400021871	Potato	plastid	80.69	82.11
VIT_08s0007g02190.t01	Wine grape	plastid	80.34	68.13
Os06t0320500-01	Rice	plastid	33.45	40.25
Os07t0577600-01	Rice	plastid	33.45	36.88
Os08t0435900-01	Rice	mitochondrion	30.34	36.07
Os01t0600900-02	Rice	plastid	32.07	35.63
Os01t0720500-01	Rice	plastid	32.41	35.47
Os09t0346500-04	Rice	plastid	32.07	35.09
Os07t0562700-01	Rice	extracellular, plastid	31.38	34.21
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	29.66	34.13
Os09t0439500-01	Rice	plastid	31.03	34.09
Os02t0764500-01	Rice	plastid	29.66	32.95
Os03t0592500-01	Rice	extracellular	29.66	32.7
Os11t0242800-01	Rice	plastid	31.03	31.8
Os02t0197600-01	Rice	plastid	27.24	29.37
Os09t0296800-01	Rice	plastid	32.07	28.97

Protein Annotations

MapMan:1.1.1.1.2	Gene3D:1.10.3460.10	EntrezGene:4343583	EMBL:AF058796	EMBL:AK058293	EMBL:AK098992
EMBL:AK103924	EMBL:AK104619	EMBL:AK119534	ProteinID:BAC84033.1	ProteinID:BAF21889.1	ProteinID:BAT02122.1
InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941
GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329	EnsemblPlantsGene:Os07g0558400	EnsemblPlants:Os07t0558400-01
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF6	UniProt:Q6Z411	SUPFAM:SSF103511	UniParc:UPI00000A85E8
RefSeq:XP_015646910.1	SEG:seg	:	:	:	:

Description

light-harvesting protein CP29Similar to Chlorophyll a/b-binding protein CP29 precursor. (Os07t0558400-01)

Coordinates

chr7:-:22316343..22317935

Molecular Weight (calculated)

31351.2 Da

IEP (calculated)

5.159

GRAVY (calculated)

-0.090

Length

290 amino acids

Sequence
(BLAST)

001: MASSVAAAAS TFLGTRLADP APQSGRIVAR FGFGGGKKAA AKKAARPSAP TTDRPLWFPG AVAPDYLDGS LVGDYGFDPF GLGKPAEYLQ FELDSLDQNL
101: AKNNAGEIIG TRFETGEVKS TPFQPYTEVF GLQRFRECEL IHGRWAMLAT LGALSVEWLT GVTWQDAGKV ELVDGSSYLG QPLPFSISTL IWIEVLVIGY
201: IEFQRNAELD PEKRLYPGGS YFDPLGLASD PEKKERLQLA EIKHARLAMV AFLGFAVQAA ATGKGPLNNW ATHLSDPLHT TIFDTFSSSS

Best Arabidopsis Sequence Match ( AT5G01530.1 )
(BLAST)

001: MAATSAAAAA ASSIMGTRVA PGIHPGSGRF TAVFGFGKKK AAPKKSAKKT VTTDRPLWYP GAISPDWLDG SLVGDYGFDP FGLGKPAEYL QFDIDSLDQN
101: LAKNLAGDVI GTRTEAADAK STPFQPYSEV FGIQRFRECE LIHGRWAMLA TLGALSVEWL TGVTWQDAGK VELVDGSSYL GQPLPFSIST LIWIEVLVIG
201: YIEFQRNAEL DSEKRLYPGG KFFDPLGLAA DPEKTAQLQL AEIKHARLAM VAFLGFAVQA AATGKGPLNN WATHLSDPLH TTIIDTFSSS

Arabidopsis Description

LHCB4.1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q0WW97]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.