Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G018030.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G01530.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 93.33 | 76.71 |
| TraesCS2D01G209900.1 | Wheat | plastid | 98.33 | 41.26 |
| TraesCS2B01G233400.1 | Wheat | plastid | 98.33 | 41.26 |
| TraesCS2A01G206200.1 | Wheat | plastid | 98.33 | 41.26 |
| EER99537 | Sorghum | plastid | 95.83 | 39.93 |
| Zm00001d021763_P001 | Maize | plastid | 95.83 | 39.52 |
| Zm00001d006587_P001 | Maize | plastid | 95.83 | 39.52 |
| Os07t0558400-01 | Rice | plasma membrane, plastid | 95.0 | 39.31 |
| KRH75874 | Soybean | mitochondrion, nucleus, plastid | 93.33 | 38.62 |
| KRH65776 | Soybean | nucleus, plastid | 93.33 | 38.62 |
| Bra029732.1-P | Field mustard | plastid | 90.83 | 37.85 |
| CDY44667 | Canola | plastid | 90.83 | 37.85 |
| CDY04834 | Canola | plastid | 90.0 | 37.63 |
| AT5G01530.1 | Thale cress | plastid | 90.83 | 37.59 |
| Bra028906.1-P | Field mustard | plastid | 90.0 | 37.5 |
| CDY53084 | Canola | plastid | 90.0 | 37.37 |
| AT3G08940.2 | Thale cress | plastid | 89.17 | 37.28 |
| VIT_08s0007g02190.t01 | Wine grape | plastid | 86.67 | 30.41 |
| HORVU1Hr1G088930.2 | Barley | endoplasmic reticulum | 23.33 | 23.73 |
| HORVU7Hr1G046320.2 | Barley | plastid | 50.0 | 21.05 |
| HORVU5Hr1G013200.1 | Barley | plastid | 47.5 | 20.14 |
| HORVU5Hr1G109250.1 | Barley | plastid | 43.33 | 19.55 |
| HORVU5Hr1G124160.1 | Barley | plastid | 42.5 | 19.17 |
| HORVU5Hr1G087250.1 | Barley | plastid | 42.5 | 19.17 |
| HORVU1Hr1G088880.1 | Barley | plastid | 42.5 | 19.17 |
| HORVU1Hr1G078380.1 | Barley | plastid | 41.67 | 18.87 |
| HORVU7Hr1G040370.1 | Barley | plastid | 41.67 | 18.8 |
| HORVU6Hr1G091660.1 | Barley | plastid | 41.67 | 18.8 |
| HORVU1Hr1G088900.1 | Barley | plastid | 41.67 | 18.8 |
| HORVU6Hr1G016880.1 | Barley | plastid | 41.67 | 18.8 |
| HORVU6Hr1G016850.1 | Barley | plastid | 41.67 | 18.8 |
| HORVU2Hr1G040780.7 | Barley | plastid | 41.67 | 18.38 |
| HORVU5Hr1G066280.1 | Barley | plastid | 36.67 | 17.96 |
| HORVU1Hr1G088870.2 | Barley | plastid | 42.5 | 17.65 |
| HORVU6Hr1G091650.1 | Barley | plastid | 41.67 | 17.61 |
| HORVU2Hr1G036960.4 | Barley | plastid | 40.83 | 17.38 |
| HORVU6Hr1G016890.6 | Barley | plastid | 41.67 | 17.24 |
| HORVU1Hr1G088920.3 | Barley | plastid | 41.67 | 16.89 |
| HORVU5Hr1G054000.1 | Barley | mitochondrion, plastid | 43.33 | 16.77 |
| HORVU7Hr1G040380.1 | Barley | plastid | 41.67 | 16.03 |
| HORVU1Hr1G089180.1 | Barley | plastid | 41.67 | 15.77 |
| HORVU5Hr1G062240.1 | Barley | plastid | 36.67 | 15.44 |
| HORVU5Hr1G109260.4 | Barley | plastid | 41.67 | 15.43 |
| HORVU5Hr1G109360.1 | Barley | plastid | 41.67 | 15.43 |
| HORVU7Hr1G058120.1 | Barley | plastid | 41.67 | 15.06 |
| HORVU4Hr1G015260.2 | Barley | plastid | 35.83 | 14.93 |
| HORVU5Hr1G082420.1 | Barley | plastid | 38.33 | 13.41 |
| HORVU2Hr1G079920.1 | Barley | cytosol, mitochondrion, plastid | 31.67 | 12.97 |
| HORVU2Hr1G079910.1 | Barley | cytosol | 5.0 | 2.96 |
Protein Annotations
| Gene3D:1.10.3460.10 | MapMan:35.1 | UniProt:A0A287HTA9 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 |
| GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009765 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 |
| EnsemblPlantsGene:HORVU2Hr1G041270 | EnsemblPlants:HORVU2Hr1G041270.2 | InterPro:IPR023329 | PFAM:PF00504 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF6 |
| SUPFAM:SSF103511 | TMHMM:TMhelix | UniParc:UPI000B47A73C | : | : | : |
Description
Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A287HTA9]
Coordinates
chrchr2H:+:202976382..202977002
Molecular Weight (calculated)
13162.7 Da
IEP (calculated)
4.595
GRAVY (calculated)
0.075
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: VELVDGSSYL GQPLPFTITT LIWIEVLVIG YIEFQRNAEL DPERRLYPGG SYFDPLGLAA DPEKKETLQL AEIKHARLAM VAFLGFAVQA AATGKGPLNN
101: WATHLSDPLH TTIFDTFGSS
101: WATHLSDPLH TTIFDTFGSS
001: MAATSAAAAA ASSIMGTRVA PGIHPGSGRF TAVFGFGKKK AAPKKSAKKT VTTDRPLWYP GAISPDWLDG SLVGDYGFDP FGLGKPAEYL QFDIDSLDQN
101: LAKNLAGDVI GTRTEAADAK STPFQPYSEV FGIQRFRECE LIHGRWAMLA TLGALSVEWL TGVTWQDAGK VELVDGSSYL GQPLPFSIST LIWIEVLVIG
201: YIEFQRNAEL DSEKRLYPGG KFFDPLGLAA DPEKTAQLQL AEIKHARLAM VAFLGFAVQA AATGKGPLNN WATHLSDPLH TTIIDTFSSS
101: LAKNLAGDVI GTRTEAADAK STPFQPYSEV FGIQRFRECE LIHGRWAMLA TLGALSVEWL TGVTWQDAGK VELVDGSSYL GQPLPFSIST LIWIEVLVIG
201: YIEFQRNAEL DSEKRLYPGG KFFDPLGLAA DPEKTAQLQL AEIKHARLAM VAFLGFAVQA AATGKGPLNN WATHLSDPLH TTIIDTFSSS
Arabidopsis Description
LHCB4.1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q0WW97]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.