Factsheet for HORVU5Hr1G109260.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G109360.1	Barley	plastid	100.0	100.0
HORVU5Hr1G109250.1	Barley	plastid	80.25	97.74
HORVU1Hr1G078380.1	Barley	plastid	79.01	96.6
HORVU7Hr1G040370.1	Barley	plastid	78.4	95.49
HORVU1Hr1G088880.1	Barley	plastid	77.78	94.74
HORVU1Hr1G088900.1	Barley	plastid	77.78	94.74
HORVU6Hr1G091660.1	Barley	plastid	77.78	94.74
HORVU6Hr1G016880.1	Barley	plastid	77.78	94.74
HORVU6Hr1G016850.1	Barley	plastid	76.85	93.61
Os01t0720500-01	Rice	plastid	74.69	91.32
HORVU6Hr1G091650.1	Barley	plastid	79.32	90.49
HORVU5Hr1G087250.1	Barley	plastid	74.07	90.23
HORVU5Hr1G124160.1	Barley	plastid	74.07	90.23
HORVU1Hr1G088870.2	Barley	plastid	79.32	88.93
HORVU6Hr1G016890.6	Barley	plastid	78.7	87.93
HORVU1Hr1G088920.3	Barley	plastid	80.25	87.84
PGSC0003DMT400034902	Potato	plastid	34.26	84.73
HORVU1Hr1G089180.1	Barley	plastid	82.41	84.23
HORVU7Hr1G040380.1	Barley	plastid	77.78	80.77
HORVU7Hr1G058120.1	Barley	plastid	75.62	73.8
HORVU2Hr1G040780.7	Barley	plastid	55.25	65.81
HORVU1Hr1G088930.2	Barley	endoplasmic reticulum	22.22	61.02
HORVU5Hr1G082420.1	Barley	plastid	62.04	58.6
HORVU2Hr1G041270.2	Barley	endoplasmic reticulum, plastid	15.43	41.67
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	36.11	37.74
HORVU4Hr1G015260.2	Barley	plastid	33.02	37.15
HORVU2Hr1G036960.4	Barley	plastid	29.01	33.33
HORVU7Hr1G046320.2	Barley	plastid	28.7	32.63
HORVU5Hr1G066280.1	Barley	plastid	24.07	31.84
HORVU5Hr1G062240.1	Barley	plastid	26.85	30.53
HORVU2Hr1G079920.1	Barley	cytosol, mitochondrion, plastid	21.3	23.55
HORVU5Hr1G013200.1	Barley	plastid	19.44	22.26
HORVU2Hr1G079910.1	Barley	cytosol	11.42	18.23

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:HORVU5Hr1G109260
EnsemblPlants:HORVU5Hr1G109260.4	InterPro:IPR023329	UniProt:M0ZEV7	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56
SUPFAM:SSF103511	UniParc:UPI0002955CA7	:	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:M0ZEV7]

Coordinates

chrchr5H:+:629449462..629450969

Molecular Weight (calculated)

34545.4 Da

IEP (calculated)

6.754

GRAVY (calculated)

0.042

Length

324 amino acids

Sequence
(BLAST)

001: MTSKIQISCF PPLSCQPTTA DSLCPSIALR RPLLRSSQTI STLIPNSWST QTGPPSIRMA STTMSLSSQA FAGKAVKNLP SSSVFGEARV TMRKTAAKAK
101: QVASGSPWYG SDRVLYLGPL SGEPPSYLTG EFPGDYGWDT AGLSADPETF AKNRELEVIH CRWAMLGALG CVFPELLARN GVKFGEAVWF KAGSQIFSEG
201: GLDYLGNPSL VHAQSILAIW ACQVVLMGAV EGYRIAGGPL GEIVDPLYPG GSFDPLGLAD DPEAFAELKV KEVKNGRLAM FSMFGFFVQA IVTGKGPLEN
301: LADHLADPVN NNAWAFATNF VPGK

Best Arabidopsis Sequence Match ( AT2G34420.1 )
(BLAST)

001: MASSTMALSS PAFAGKAVKP AASDVLGSGR VTMRKTVAKP KGPSGSPWYG SDRVKYLGPF SGEPPSYLTG EFPGDYGWDT AGLSADPETF ARNRELEVIH
101: SRWAMLGALG CVFPELLARN GVKFGEAVWF KAGSQIFSDG GLDYLGNPSL VHAQSILAIW ATQVILMGAV EGYRVAGDGP LGEAEDLLYP GGSFDPLGLA
201: TDPEAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAFATN FVPGK

Arabidopsis Description

LHB1B2Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39141]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.