Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G016880.1 | Barley | plastid | 90.0 | 98.12 |
| TraesCSU01G250000.1 | Wheat | plastid | 88.62 | 96.62 |
| HORVU6Hr1G091660.1 | Barley | plastid | 88.28 | 96.24 |
| HORVU7Hr1G040370.1 | Barley | plastid | 87.93 | 95.86 |
| TraesCS6D01G088600.1 | Wheat | plastid | 87.59 | 95.49 |
| HORVU6Hr1G016850.1 | Barley | plastid | 86.9 | 94.74 |
| HORVU1Hr1G078380.1 | Barley | plastid | 86.55 | 94.72 |
| HORVU5Hr1G109250.1 | Barley | plastid | 86.55 | 94.36 |
| HORVU1Hr1G088900.1 | Barley | plastid | 86.21 | 93.98 |
| HORVU1Hr1G088880.1 | Barley | plastid | 85.52 | 93.23 |
| HORVU6Hr1G091650.1 | Barley | plastid | 90.69 | 92.61 |
| Os01t0720500-01 | Rice | plastid | 81.72 | 89.43 |
| HORVU5Hr1G087250.1 | Barley | plastid | 81.72 | 89.1 |
| HORVU5Hr1G124160.1 | Barley | plastid | 81.72 | 89.1 |
| HORVU1Hr1G088920.3 | Barley | plastid | 90.34 | 88.51 |
| TraesCS6A01G094500.1 | Wheat | plastid | 91.72 | 87.21 |
| HORVU1Hr1G088870.2 | Barley | plastid | 86.9 | 87.2 |
| PGSC0003DMT400034902 | Potato | plastid | 37.93 | 83.97 |
| HORVU1Hr1G089180.1 | Barley | plastid | 90.34 | 82.65 |
| HORVU7Hr1G040380.1 | Barley | plastid | 87.24 | 81.09 |
| TraesCS6A01G094400.1 | Wheat | plastid | 93.1 | 81.08 |
| HORVU5Hr1G109260.4 | Barley | plastid | 87.93 | 78.7 |
| HORVU5Hr1G109360.1 | Barley | plastid | 87.93 | 78.7 |
| HORVU7Hr1G058120.1 | Barley | plastid | 82.07 | 71.69 |
| HORVU2Hr1G040780.7 | Barley | plastid | 61.38 | 65.44 |
| HORVU1Hr1G088930.2 | Barley | endoplasmic reticulum | 24.48 | 60.17 |
| HORVU5Hr1G082420.1 | Barley | plastid | 71.03 | 60.06 |
| HORVU2Hr1G041270.2 | Barley | endoplasmic reticulum, plastid | 17.24 | 41.67 |
| HORVU5Hr1G054000.1 | Barley | mitochondrion, plastid | 40.34 | 37.74 |
| HORVU4Hr1G015260.2 | Barley | plastid | 35.52 | 35.76 |
| HORVU7Hr1G046320.2 | Barley | plastid | 31.72 | 32.28 |
| HORVU2Hr1G036960.4 | Barley | plastid | 30.69 | 31.56 |
| HORVU5Hr1G066280.1 | Barley | plastid | 25.86 | 30.61 |
| HORVU5Hr1G062240.1 | Barley | plastid | 30.0 | 30.53 |
| HORVU2Hr1G079920.1 | Barley | cytosol, mitochondrion, plastid | 24.48 | 24.23 |
| HORVU5Hr1G013200.1 | Barley | plastid | 22.07 | 22.61 |
| HORVU2Hr1G079910.1 | Barley | cytosol | 12.76 | 18.23 |
Protein Annotations
| MapMan:1.1.1.1.1 | Gene3D:1.10.3460.10 | UniProt:A0A287TFK8 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009522 |
| GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009765 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 |
| EnsemblPlantsGene:HORVU6Hr1G016890 | EnsemblPlants:HORVU6Hr1G016890.6 | InterPro:IPR023329 | PFAM:PF00504 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF56 |
| SUPFAM:SSF103511 | UniParc:UPI000B47C6FE | SEG:seg | : | : | : |
Description
Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A287TFK8]
Coordinates
chrchr6H:+:38486544..38487637
Molecular Weight (calculated)
31010.1 Da
IEP (calculated)
6.397
GRAVY (calculated)
0.077
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: LLSNHLHTHS SLRTHTAETS LSFPMAAATM SISSSTFAGK AVKNVPSLAL FGEARVTMRK AAAKAKQVSS RSPWYGADRV LYLGPLSGEP PSYLTGEFPG
101: DYGWDTAGLS ADPETFAKNR ELEVIHCRWA MLGALGCVFP ELLARNGVKF GEAVWFKAGS QIFSEGGLDY LGNPSLVHAQ SILAIWACQV VLMGAVEGYR
201: IAGGPLGEII DPLYPGGSFD PLGLAEDPEA FAELKVKEIK NGRLAMFSMF GFFVQAIVTG KGPLENLADH IADPVNNNAW AFATNFVPGK
101: DYGWDTAGLS ADPETFAKNR ELEVIHCRWA MLGALGCVFP ELLARNGVKF GEAVWFKAGS QIFSEGGLDY LGNPSLVHAQ SILAIWACQV VLMGAVEGYR
201: IAGGPLGEII DPLYPGGSFD PLGLAEDPEA FAELKVKEIK NGRLAMFSMF GFFVQAIVTG KGPLENLADH IADPVNNNAW AFATNFVPGK
001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
Arabidopsis Description
LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.