Factsheet for HORVU7Hr1G046320.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	plastid

plastid: 12481076
plastid: 17675669

msms PMID: 12481076 doi

L Zolla, S Rinalducci, AM Timperio, CG Huber

Department of Environmental Sciences, University of Tuscia, Viterbo, Italy., Department of Environmental Sciences, University of Tuscia, Viterbo, Italy. zolla@unitus.it

msms PMID: 17675669 doi

S Frigerio, C Campoli, S Zorzan, LI Fantoni, C Crosatti, F Drepper, W Haehnel, L Cattivelli, T Morosinotto, R Bassi

LGBP, UMR 6191 CEA-CNRS-Université de la Méditerranée, Marseille 13288, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G227100.1	Wheat	plastid	85.96	99.19
TraesCS7B01G192500.1	Wheat	plastid	85.26	99.18
TraesCS7D01G227300.1	Wheat	plastid	85.26	99.18
EES04597	Sorghum	plastid	78.6	91.43
Zm00001d015385_P001	Maize	plastid	77.89	90.61
Os06t0320500-01	Rice	plastid	75.44	89.21
Bra003198.1-P	Field mustard	plastid	64.56	76.35
CDX67613	Canola	plastid	64.56	76.35
CDX73435	Canola	plastid	64.56	76.35
Bra007109.1-P	Field mustard	plastid	64.21	75.93
CDY07517	Canola	plastid	64.21	75.93
AT3G54890.1	Thale cress	plastid	64.21	75.93
VIT_13s0019g04140.t01	Wine grape	plastid	64.91	75.82
CDX78277	Canola	plastid	63.86	75.52
GSMUA_Achr2P06350_001	Banana	unclear	63.51	75.1
PGSC0003DMT400059995	Potato	plastid	63.16	73.17
Solyc05g056050.2.1	Tomato	plastid	62.81	72.76
PGSC0003DMT400060313	Potato	plastid	62.81	72.76
Solyc05g056070.2.1	Tomato	plastid	62.46	72.36
KRH70044	Soybean	mitochondrion, nucleus, plastid	61.4	71.14
KRH08384	Soybean	nucleus, plastid	61.4	71.14
HORVU2Hr1G041270.2	Barley	endoplasmic reticulum, plastid	21.05	50.0
Zm00001d024372_P001	Maize	plastid	38.25	45.99
HORVU5Hr1G066280.1	Barley	plastid	32.98	38.37
HORVU1Hr1G088880.1	Barley	plastid	32.98	35.34
HORVU5Hr1G109250.1	Barley	plastid	32.63	34.96
HORVU1Hr1G078380.1	Barley	plastid	32.28	34.72
HORVU6Hr1G016850.1	Barley	plastid	32.28	34.59
HORVU6Hr1G016880.1	Barley	plastid	32.28	34.59
HORVU6Hr1G091660.1	Barley	plastid	32.28	34.59
HORVU5Hr1G087250.1	Barley	plastid	31.93	34.21
HORVU5Hr1G124160.1	Barley	plastid	31.93	34.21
HORVU7Hr1G040370.1	Barley	plastid	31.93	34.21
HORVU1Hr1G088900.1	Barley	plastid	31.23	33.46
HORVU1Hr1G088870.2	Barley	plastid	33.33	32.87
HORVU6Hr1G091650.1	Barley	plastid	32.28	32.39
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	34.74	31.94
HORVU6Hr1G016890.6	Barley	plastid	32.28	31.72
HORVU2Hr1G040780.7	Barley	plastid	29.82	31.25
HORVU2Hr1G036960.4	Barley	plastid	30.88	31.21
HORVU1Hr1G088920.3	Barley	plastid	32.28	31.08
HORVU5Hr1G062240.1	Barley	plastid	29.82	29.82
HORVU1Hr1G089180.1	Barley	plastid	32.28	29.02
HORVU7Hr1G040380.1	Barley	plastid	31.58	28.85
HORVU5Hr1G109360.1	Barley	plastid	32.63	28.7
HORVU5Hr1G109260.4	Barley	plastid	32.63	28.7
HORVU7Hr1G058120.1	Barley	plastid	32.28	27.71
HORVU1Hr1G088930.2	Barley	endoplasmic reticulum	10.53	25.42
HORVU5Hr1G082420.1	Barley	plastid	30.18	25.07
HORVU5Hr1G013200.1	Barley	plastid	23.51	23.67
HORVU4Hr1G015260.2	Barley	plastid	23.51	23.26
HORVU2Hr1G079920.1	Barley	cytosol, mitochondrion, plastid	23.51	22.87
HORVU2Hr1G079910.1	Barley	cytosol	11.58	16.26

Protein Annotations

MapMan:1.1.4.1.1	Gene3D:1.10.3460.10	UniProt:A0A287WCE5	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009409	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009534	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009637	GO:GO:0009644	GO:GO:0009645
GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010114	GO:GO:0010218
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0019904	EnsemblPlantsGene:HORVU7Hr1G046320	EnsemblPlants:HORVU7Hr1G046320.2	InterPro:IPR023329	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF7	SUPFAM:SSF103511	UniParc:UPI000B460DAA	SEG:seg	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A287WCE5]

Coordinates

chrchr7H:+:150363935..150365354

Molecular Weight (calculated)

30315.4 Da

IEP (calculated)

7.315

GRAVY (calculated)

-0.042

Length

285 amino acids

Sequence
(BLAST)

001: RALISSLRFP CPLRAHACSS SCCCLTAQQG AASIERAAMA MASSSGLRSC SAVGVPSLLA PSSRSGRSGL PFCAYATTSG RVTMSAEWFP GQPRPAHLDG
101: SSPGDFGFDP LGLATVPENF XXFKESEIYH CRWAMLCVPG VLVPEALGLG NWVKAQEWAA LPDGQATYLG NPVPWGNLPT ILAIEFLAIA FAEQQRTMEK
201: DPEKKKYPGG AFDPLGFSKD PAKFEELKLK EIKNGRLAML AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPR NIYGP

Best Arabidopsis Sequence Match ( AT3G54890.1 )
(BLAST)

001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N

Arabidopsis Description

LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.