Factsheet for HORVU5Hr1G082420.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
YLoc:	plastid

plastid: 15682463
plastid: 16758444
plastid: 17675669

msms PMID: 16758444 doi

B Granvogl, V Reisinger, LA Eichacker

Department für Biologie I, Ludwig-Maximilians-Universität, München, Germany.

msms PMID: 15682463 doi

C Ciambella, P Roepstorff, EM Aro, L Zolla

Department of Environmental Sciences, University of Tuscia, Viterbo, Italy.

msms PMID: 17675669 doi

S Frigerio, C Campoli, S Zorzan, LI Fantoni, C Crosatti, F Drepper, W Haehnel, L Cattivelli, T Morosinotto, R Bassi

LGBP, UMR 6191 CEA-CNRS-Université de la Méditerranée, Marseille 13288, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G322500.1	Wheat	plastid	76.09	99.24
TraesCS5B01G322900.1	Wheat	plastid	76.09	99.24
TraesCS5D01G329200.1	Wheat	plastid	76.09	99.24
Os03t0592500-01	Rice	extracellular	72.01	93.92
Zm00001d033136_P001	Maize	plastid	69.68	91.92
Zm00001d033132_P001	Maize	plastid	69.68	91.92
EER93861	Sorghum	plastid	69.97	91.6
VIT_12s0057g00630.t01	Wine grape	plastid	67.06	86.79
PGSC0003DMT400015740	Potato	plastid	66.18	85.66
Solyc07g047850.2.1	Tomato	plastid	65.6	84.91
GSMUA_Achr4P33040_001	Banana	plastid, unclear	65.31	84.85
CDY15050	Canola	plastid	65.31	84.53
Bra013183.1-P	Field mustard	plastid	65.01	84.15
CDX93077	Canola	plastid	65.01	84.15
KRH14122	Soybean	nucleus, plastid	64.72	83.77
PGSC0003DMT400010985	Potato	plastid	64.72	83.77
KRH74003	Soybean	nucleus, plastid	64.72	83.77
Solyc12g006140.1.1	Tomato	plastid	64.43	83.4
AT2G05070.1	Thale cress	plastid	64.43	83.4
Bra039070.1-P	Field mustard	plastid	64.14	83.02
CDY20039	Canola	plastid	64.14	83.02
Bra025297.1-P	Field mustard	plastid	64.14	82.71
CDX83726	Canola	plastid	64.14	82.71
CDY49770	Canola	plastid	64.14	82.71
CDY13732	Canola	plastid	64.14	82.71
CDY00149	Canola	plastid	64.14	82.71
CDY03989	Canola	plastid	63.85	82.33
Bra033022.1-P	Field mustard	plastid	60.06	79.84
AT3G27690.2	Thale cress	golgi, plastid	66.18	76.17
Zm00001d013766_P001	Maize	plastid	31.78	75.69
HORVU1Hr1G088880.1	Barley	plastid	58.6	75.56
HORVU1Hr1G088900.1	Barley	plastid	58.31	75.19
HORVU5Hr1G087250.1	Barley	plastid	58.02	74.81
HORVU5Hr1G124160.1	Barley	plastid	58.02	74.81
HORVU6Hr1G091660.1	Barley	plastid	58.02	74.81
HORVU5Hr1G109250.1	Barley	plastid	57.73	74.44
HORVU6Hr1G016880.1	Barley	plastid	57.73	74.44
HORVU7Hr1G040370.1	Barley	plastid	57.73	74.44
HORVU1Hr1G078380.1	Barley	plastid	57.43	74.34
HORVU6Hr1G016850.1	Barley	plastid	57.14	73.68
HORVU6Hr1G091650.1	Barley	plastid	59.18	71.48
HORVU6Hr1G016890.6	Barley	plastid	60.06	71.03
HORVU1Hr1G088870.2	Barley	plastid	59.18	70.24
HORVU2Hr1G040780.7	Barley	plastid	55.1	69.49
HORVU1Hr1G088920.3	Barley	plastid	59.48	68.92
HORVU1Hr1G089180.1	Barley	plastid	61.22	66.25
AT2G05100.2	Thale cress	plastid	59.77	64.67
HORVU7Hr1G058120.1	Barley	plastid	62.39	64.46
HORVU7Hr1G040380.1	Barley	plastid	58.02	63.78
HORVU5Hr1G109360.1	Barley	plastid	58.6	62.04
HORVU5Hr1G109260.4	Barley	plastid	58.6	62.04
HORVU1Hr1G088930.2	Barley	endoplasmic reticulum	17.78	51.69
HORVU2Hr1G041270.2	Barley	endoplasmic reticulum, plastid	13.41	38.33
HORVU5Hr1G054000.1	Barley	mitochondrion, plastid	32.36	35.81
HORVU4Hr1G015260.2	Barley	plastid	30.03	35.76
HORVU5Hr1G066280.1	Barley	plastid	22.74	31.84
HORVU7Hr1G046320.2	Barley	plastid	25.07	30.18
HORVU2Hr1G036960.4	Barley	plastid	24.2	29.43
HORVU5Hr1G062240.1	Barley	plastid	22.45	27.02
HORVU2Hr1G079920.1	Barley	cytosol, mitochondrion, plastid	19.53	22.87
HORVU5Hr1G013200.1	Barley	plastid	18.66	22.61
HORVU2Hr1G079910.1	Barley	cytosol	10.5	17.73

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	UniProt:A0A287S128	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
EnsemblPlantsGene:HORVU5Hr1G082420	EnsemblPlants:HORVU5Hr1G082420.1	InterPro:IPR023329	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF33
SUPFAM:SSF103511	UniParc:UPI000B4676B3	SEG:seg	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A287S128]

Coordinates

chrchr5H:+:567428745..567430062

Molecular Weight (calculated)

37246.4 Da

IEP (calculated)

8.656

GRAVY (calculated)

-0.209

Length

343 amino acids

Sequence
(BLAST)

001: GRRVATPGTP DADPYPEASR RPMGWRGRVA PRIHQLRPAH LSRRIKIHLA HRTSPPKHTH THTILQLISL SSQAAPATSE MAASALHQTT SFLGTAPRRD
101: DLVRSVGDFG GRITMRRTVK SAPQSIWYGP DRPKYLGPFS EQTPSYLTGE FPGDYGWDTA GLSADPETFA KNRELEVIHS RWAMLGALGC VFPEILSKNG
201: IKFGEAVWFK AGAQIFSEGG LDYLGNPNLV HAQSILAIWA CQVVLMGFIE GYRVGGGPLG EGLDIIYPGG AFDPLGLADD PDTAAELKVK ELKNGRLAMF
301: SMFGFFVQAI VTGKGPVENL FDHIADPVNN NAWAFATNFA PGS

Best Arabidopsis Sequence Match ( AT3G27690.2 )
(BLAST)

001: MNTLLYKRRL QFNNISFSLT SFLFLCSCLE EAMATSAIQH SSFAGQTTLK PSNDLLRKIG ASNGGGRIIM RRTVKSTPQS IWYGPDRPKY LGPFSENTPS
101: YLTGEYPGDY GWDTAGLSAD PETFAKNREL EVIHSRWAML GALGCTFPEI LSKNGVKFGE AVWFKAGSQI FSEGGLDYLG NPNLIHAQSI LAIWACQVVL
201: MGFIEGYRIG GGPLGEGLDP LYPGGAFDPL NLAEDPEAFS ELKVKELKNG RLAMFSMFGF FVQAIVTGKG PIENLFDHIA DPVANNAWAY ATNFVPGK

Arabidopsis Description

LHCB2.4Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1I9LMB4]
SUBAcon: [golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.