Factsheet for Os03t0592500-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

mitochondrion: 15069638
plasma membrane: 15069638
vacuole: 18557835
extracellular: 18986194
nucleus: 19621931
cytosol: 19685898
plastid: 21433289
extracellular: 23159799
plasma membrane: 27800704
extracellular: 28232208

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

msms PMID: 18986194 doi

YH Jung, SH Jeong, SH Kim, R Singh, JE Lee, YS Cho, GK Agrawal, R Rakwal, NS Jwa

Department of Molecular Biology, Sejong University, Gunja-dong, Seoul 143-747, South Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033132_P001	Maize	plastid	94.3	95.38
Zm00001d033136_P001	Maize	plastid	94.3	95.38
EER93861	Sorghum	plastid	94.68	95.04
TraesCS5A01G322500.1	Wheat	plastid	94.68	94.68
TraesCS5B01G322900.1	Wheat	plastid	94.68	94.68
TraesCS5D01G329200.1	Wheat	plastid	94.68	94.68
VIT_12s0057g00630.t01	Wine grape	plastid	89.73	89.06
PGSC0003DMT400015740	Potato	plastid	89.35	88.68
Solyc07g047850.2.1	Tomato	plastid	88.59	87.92
GSMUA_Achr4P33040_001	Banana	plastid, unclear	88.21	87.88
KRH74003	Soybean	nucleus, plastid	88.21	87.55
KRH14122	Soybean	nucleus, plastid	88.21	87.55
PGSC0003DMT400010985	Potato	plastid	87.83	87.17
Solyc12g006140.1.1	Tomato	plastid	87.45	86.79
CDY15050	Canola	plastid	86.31	85.66
AT2G05070.1	Thale cress	plastid	85.93	85.28
Bra013183.1-P	Field mustard	plastid	85.93	85.28
CDX93077	Canola	plastid	85.93	85.28
CDY20039	Canola	plastid	85.55	84.91
Bra039070.1-P	Field mustard	plastid	85.55	84.91
CDY49770	Canola	plastid	85.55	84.59
Bra025297.1-P	Field mustard	plastid	85.55	84.59
CDY00149	Canola	plastid	85.55	84.59
CDY13732	Canola	plastid	85.55	84.59
CDY03989	Canola	plastid	85.17	84.21
CDX83726	Canola	plastid	84.79	83.83
Bra033022.1-P	Field mustard	plastid	80.23	81.78
Zm00001d013766_P001	Maize	plastid	42.21	77.08
Os01t0600900-02	Rice	plastid	76.43	77.01
Os09t0346500-04	Rice	plastid	76.81	76.23
AT3G27690.2	Thale cress	golgi, plastid	85.55	75.5
Os01t0720500-01	Rice	plastid	74.9	74.34
HORVU5Hr1G082420.1	Barley	plastid	93.92	72.01
Os07t0562700-01	Rice	extracellular, plastid	71.1	70.3
AT2G05100.2	Thale cress	plastid	79.09	65.62
Os11t0242800-01	Rice	plastid	44.11	40.99
Os06t0320500-01	Rice	plastid	32.32	35.27
Os07t0577600-01	Rice	plastid	33.46	33.46
Os09t0296800-01	Rice	plastid	40.68	33.33
Os08t0435900-01	Rice	mitochondrion	29.28	31.56
Os02t0197600-01	Rice	plastid	31.18	30.48
Os09t0439500-01	Rice	plastid	30.42	30.3
Os02t0764500-01	Rice	plastid	30.04	30.27
Os07t0558400-01	Rice	plasma membrane, plastid	32.7	29.66
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	26.24	27.38

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:4333359	ProteinID:AAT81763.1	ProteinID:ABF97413.1	EMBL:AF061577
ProteinID:BAF12500.1	ProteinID:BAS85134.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	EMBL:D00642
ProteinID:EAZ27662.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538
GO:GO:0031409	GO:GO:0046872	UniProt:I3QD65	InterPro:IPR023329	EMBL:JF969220	EnsemblPlantsGene:Os03g0592500
EnsemblPlants:Os03t0592500-01	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF33	UniProt:Q10HD0	SUPFAM:SSF103511
UniParc:UPI0000400373	RefSeq:XP_015632068.1	:	:	:	:

Description

LHCB, LHCP II, Lhcb2Similar to Photosystem II type II chlorophyll a/b binding protein (Fragment). (Os03t0592500-01);Similar to Chloroplast chlorophyll a-b binding protein (Fragment). (Os03t0592500-02)

Coordinates

chr3:+:22000043..22001236

Molecular Weight (calculated)

28497.0 Da

IEP (calculated)

5.708

GRAVY (calculated)

-0.087

Length

263 amino acids

Sequence
(BLAST)

001: MAASALHQTT SFLGTAPRRD ELVRRVGDSG GRITMRRTVK SAPQSIWYGP DRPKYLGPFS EQTPSYLTGE FPGDYGWDTA GLSADPETFA RNRELEVIHS
101: RWAMLGALGC VFPEILSKNG VKFGEAVWFK AGAQIFSEGG LDYLGNPNLV HAQSILAIWA VQVVLMGFVE GYRVGGGPLG EGLDKVYPGG AFDPLGLADD
201: PDTFAELKVK ELKNGRLAMF SMFGFFVQAI VTGKGPIENL FDHVADPVAN NAWAYATNFV PGK

Best Arabidopsis Sequence Match ( AT2G05100.1 )
(BLAST)

001: MATSAIQQSS FAGQTALKPS NELLRKVGVS GGGRVTMRRT VKSTPQSIWY GPDRPKYLGP FSENTPSYLT GEYPGDYGWD TAGLSADPET FAKNRELEVI
101: HSRWAMLGAL GCTFPEILSK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WAVQVVLMGF IEGYRIGGGP LGEGLDPLYP GGAFDPLNLA
201: EDPEAFSELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIE NLFDHLADPV ANNAWSYATN FVPGN

Arabidopsis Description

LHCB2.1photosystem II light harvesting complex gene 2.1 [Source:TAIR;Acc:AT2G05100]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.