Factsheet for Os06t0320500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 19089317

nucleus: 19621931
plastid: 21433289
extracellular: 23159799

gfp PMID: 19089317 doi

CH Goh, S Jang, S Jung, HS Kim, HG Kang, YI Park, HJ Bae, CH Lee, G An

Environmental Biotechnology and Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015385_P001	Maize	plastid	93.78	92.24
EES04597	Sorghum	plastid	93.36	91.84
TraesCS7B01G192500.1	Wheat	plastid	90.04	88.57
TraesCS7D01G227300.1	Wheat	plastid	90.04	88.57
TraesCS7A01G227100.1	Wheat	plastid	90.04	87.85
VIT_13s0019g04140.t01	Wine grape	plastid	80.5	79.51
GSMUA_Achr2P06350_001	Banana	unclear	77.59	77.59
Bra003198.1-P	Field mustard	plastid	75.93	75.93
CDX67613	Canola	plastid	75.93	75.93
Bra007109.1-P	Field mustard	plastid	75.52	75.52
CDX73435	Canola	plastid	75.52	75.52
CDY07517	Canola	plastid	75.52	75.52
HORVU7Hr1G046320.2	Barley	plastid	89.21	75.44
CDX78277	Canola	plastid	75.1	75.1
AT3G54890.1	Thale cress	plastid	75.1	75.1
PGSC0003DMT400059995	Potato	plastid	76.35	74.8
KRH70044	Soybean	mitochondrion, nucleus, plastid	75.93	74.39
KRH08384	Soybean	nucleus, plastid	75.93	74.39
Solyc05g056050.2.1	Tomato	plastid	75.93	74.39
PGSC0003DMT400060313	Potato	plastid	75.93	74.39
Solyc05g056070.2.1	Tomato	plastid	75.52	73.98
Zm00001d024372_P001	Maize	plastid	46.47	47.26
Os08t0435900-01	Rice	mitochondrion	36.93	36.48
Os07t0577600-01	Rice	plastid	38.59	35.36
Os02t0197600-01	Rice	plastid	37.76	33.83
Os07t0558400-01	Rice	plasma membrane, plastid	40.25	33.45
Os09t0439500-01	Rice	plastid	36.51	33.33
Os09t0346500-04	Rice	plastid	36.51	33.21
Os01t0720500-01	Rice	plastid	36.51	33.21
Os01t0600900-02	Rice	plastid	35.68	32.95
Os03t0592500-01	Rice	extracellular	35.27	32.32
Os07t0562700-01	Rice	extracellular, plastid	35.27	31.95
Os02t0764500-01	Rice	plastid	34.44	31.8
Os09t0296800-01	Rice	plastid	39.0	29.28
Os04t0457000-01	Rice	extracellular, plasma membrane, plastid	29.88	28.57
Os11t0242800-01	Rice	plastid	31.54	26.86

Protein Annotations

MapMan:1.1.4.1.1	Gene3D:1.10.3460.10	EntrezGene:4340892	EMBL:AK060904	EMBL:AK098864	ProteinID:BAD61582.1
ProteinID:BAF19427.1	ProteinID:BAS97503.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	ProteinID:EAZ36817.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009409	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009534
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009637	GO:GO:0009644
GO:GO:0009645	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010114
GO:GO:0010218	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	GO:GO:0019904	GO:GO:0031409	InterPro:IPR023329	EnsemblPlantsGene:Os06g0320500
EnsemblPlants:Os06t0320500-01	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF7	UniProt:Q5ZA98	SUPFAM:SSF103511
UniParc:UPI00000A7A4E	RefSeq:XP_015644330.1	:	:	:	:

Description

Similar to Light-harvesting complex I (Fragment). (Os06t0320500-01)

Coordinates

chr6:+:12452708..12454049

Molecular Weight (calculated)

26187.3 Da

IEP (calculated)

6.018

GRAVY (calculated)

-0.158

Length

241 amino acids

Sequence
(BLAST)

001: MATSGLRSCS AVGVPSLLAP SSNRSRLPVC AYATTSGRVT MSAEWMPGQP RPAHLDGSSP GDFGFDPLGL ATVPENFERF KESEVYHCRW AMLAVPGVLV
101: PEALGLGNWV QAQEWAAEPG GQATYLGNPV PWGTLPTILV IEFVAIAFAE HQRTMEKDPE KKKYPGGAFD PLGFSKDPVK FEEYKLKEIK NGRLAMLAFV
201: GFCVQQSAYP GTGPLENLAS HLSDPWHNNI GDIIIPRTIY P

Best Arabidopsis Sequence Match ( AT3G54890.1 )
(BLAST)

001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N

Arabidopsis Description

LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.