Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P31940_001 | Banana | plastid | 86.07 | 87.14 |
| Bra003198.1-P | Field mustard | plastid | 84.43 | 85.48 |
| GSMUA_Achr2P06350_001 | Banana | unclear | 84.43 | 85.48 |
| CDX67613 | Canola | plastid | 84.43 | 85.48 |
| CDX73435 | Canola | plastid | 84.02 | 85.06 |
| CDY07517 | Canola | plastid | 84.02 | 85.06 |
| Bra007109.1-P | Field mustard | plastid | 83.61 | 84.65 |
| AT3G54890.1 | Thale cress | plastid | 83.61 | 84.65 |
| CDX78277 | Canola | plastid | 83.2 | 84.23 |
| KRH08384 | Soybean | nucleus, plastid | 84.43 | 83.74 |
| Solyc05g056050.2.1 | Tomato | plastid | 84.43 | 83.74 |
| Solyc05g056070.2.1 | Tomato | plastid | 84.43 | 83.74 |
| KRH70044 | Soybean | mitochondrion, nucleus, plastid | 84.02 | 83.33 |
| PGSC0003DMT400059995 | Potato | plastid | 84.02 | 83.33 |
| PGSC0003DMT400060313 | Potato | plastid | 84.02 | 83.33 |
| Os06t0320500-01 | Rice | plastid | 79.51 | 80.5 |
| EES04597 | Sorghum | plastid | 78.28 | 77.96 |
| Zm00001d015385_P001 | Maize | plastid | 78.28 | 77.96 |
| TraesCS7D01G227300.1 | Wheat | plastid | 76.64 | 76.33 |
| TraesCS7B01G192500.1 | Wheat | plastid | 76.64 | 76.33 |
| TraesCS7A01G227100.1 | Wheat | plastid | 76.64 | 75.71 |
| HORVU7Hr1G046320.2 | Barley | plastid | 75.82 | 64.91 |
| Zm00001d024372_P001 | Maize | plastid | 47.13 | 48.52 |
| VIT_17s0000g06350.t01 | Wine grape | plastid | 38.11 | 36.9 |
| VIT_19s0014g00160.t01 | Wine grape | plastid | 39.75 | 36.33 |
| VIT_12s0028g00320.t01 | Wine grape | plastid | 39.75 | 35.93 |
| VIT_11s0016g00730.t01 | Wine grape | plastid | 37.7 | 35.52 |
| VIT_01s0010g03620.t01 | Wine grape | plastid | 38.93 | 35.06 |
| VIT_10s0003g02890.t01 | Wine grape | plastid | 37.7 | 34.85 |
| VIT_10s0003g02900.t01 | Wine grape | plastid | 37.7 | 34.85 |
| VIT_07s0005g02220.t01 | Wine grape | plastid | 36.89 | 34.22 |
| VIT_12s0057g00630.t01 | Wine grape | plastid | 35.66 | 32.83 |
| VIT_19s0014g03660.t01 | Wine grape | plastid | 35.25 | 32.33 |
| VIT_18s0001g10550.t01 | Wine grape | plastid | 34.02 | 31.44 |
| VIT_00s0181g00180.t01 | Wine grape | plastid | 34.43 | 31.23 |
| VIT_00s0181g00200.t01 | Wine grape | plastid | 34.43 | 31.23 |
| VIT_12s0055g01110.t01 | Wine grape | plastid | 32.38 | 30.74 |
| VIT_15s0024g00040.t01 | Wine grape | plastid | 34.43 | 30.66 |
| VIT_18s0122g00430.t01 | Wine grape | plastid | 37.3 | 27.49 |
| VIT_08s0007g02190.t01 | Wine grape | plastid | 38.52 | 27.49 |
| VIT_18s0089g01170.t01 | Wine grape | cytosol, extracellular, plastid | 34.43 | 20.9 |
Protein Annotations
| MapMan:1.1.4.1.1 | Gene3D:1.10.3460.10 | EntrezGene:100263275 | wikigene:100263275 | UniProt:A5AE63 | EMBL:AM424341 |
| ProteinID:CAN75566 | ProteinID:CAN75566.1 | ProteinID:CCB56195 | ProteinID:CCB56195.1 | InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind |
| InterPro:Chlorophyll_a/b-bd_dom_sf | EMBL:FN595998 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009416 | GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 |
| GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009765 | GO:GO:0009768 | GO:GO:0009941 | GO:GO:0009987 |
| GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 |
| GO:GO:0019538 | GO:GO:0031409 | InterPro:IPR023329 | EntrezGene:LOC100263275 | wikigene:LOC100263275 | PFAM:PF00504 |
| PANTHER:PTHR21649 | PANTHER:PTHR21649:SF7 | SUPFAM:SSF103511 | TIGR:TC56094 | TIGR:TC65556 | UniParc:UPI000151E5E3 |
| ArrayExpress:VIT_13s0019g04140 | EnsemblPlantsGene:VIT_13s0019g04140 | EnsemblPlants:VIT_13s0019g04140.t01 | unigene:Vvi.6857 | RefSeq:XP_002275552 | RefSeq:XP_002275552.1 |
| SEG:seg | : | : | : | : | : |
Description
Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A5AE63]
Coordinates
chr13:+:5428850..5430227
Molecular Weight (calculated)
26328.7 Da
IEP (calculated)
6.122
GRAVY (calculated)
-0.081
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTVLRSCG VAAVAPSLLS SSKSKFATSL PLPNAAAGSA RVTMSADWMP GQPRPPYLDG SAPGDFGFDP LRLGEVPENL ERYKESELIH CRWAMLAVPG
101: VLVPEALGLG NWVQAQEWAA IPGGQATYLG NPVPWGNLPT ILAIEFLAIA FVEHQRSMEK DTEKKKYPGG AFDPLGYSKD PVKFEEYKVK EIKNGRLAIL
201: AFVGFCVQQS AYPGTGPLEN LASHLADPWH NNIGDVIIPR SIMP
101: VLVPEALGLG NWVQAQEWAA IPGGQATYLG NPVPWGNLPT ILAIEFLAIA FVEHQRSMEK DTEKKKYPGG AFDPLGYSKD PVKFEEYKVK EIKNGRLAIL
201: AFVGFCVQQS AYPGTGPLEN LASHLADPWH NNIGDVIIPR SIMP
001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N
Arabidopsis Description
LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.