Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 11
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035006 | Potato | cytosol, extracellular, vacuole | 58.17 | 95.62 |
| PGSC0003DMT400035007 | Potato | cytosol, extracellular, vacuole | 58.17 | 95.62 |
| TraesCS6B01G122500.1 | Wheat | cytosol, extracellular, plastid | 54.75 | 90.0 |
| VIT_10s0003g02900.t01 | Wine grape | plastid | 89.35 | 89.02 |
| VIT_10s0003g02890.t01 | Wine grape | plastid | 88.97 | 88.64 |
| TraesCS6B01G122700.1 | Wheat | mitochondrion, plastid | 71.1 | 88.21 |
| VIT_19s0014g00160.t01 | Wine grape | plastid | 88.97 | 87.64 |
| EES01022 | Sorghum | plastid | 88.21 | 87.55 |
| Os01t0720500-01 | Rice | plastid | 87.83 | 87.17 |
| Zm00001d044402_P001 | Maize | plastid | 87.45 | 87.12 |
| Zm00001d044399_P001 | Maize | plastid | 87.45 | 87.12 |
| OQU87124 | Sorghum | plastid | 87.45 | 87.12 |
| Zm00001d044401_P001 | Maize | plastid | 87.45 | 87.12 |
| VIT_12s0028g00320.t01 | Wine grape | plastid | 89.35 | 87.04 |
| Zm00001d011285_P001 | Maize | plastid | 87.07 | 86.74 |
| Zm00001d044396_P001 | Maize | plastid | 87.07 | 86.74 |
| TraesCS5D01G464700.1 | Wheat | plastid | 87.45 | 86.47 |
| TraesCS5B01G463100.1 | Wheat | plastid | 87.07 | 86.09 |
| TraesCS5A01G454300.1 | Wheat | plastid | 86.69 | 85.71 |
| TraesCS5B01G462800.1 | Wheat | plastid | 86.31 | 85.34 |
| TraesCS1B01G433300.1 | Wheat | plastid | 86.31 | 85.34 |
| TraesCS5B01G463000.1 | Wheat | plastid | 86.31 | 85.34 |
| TraesCS5D01G464900.1 | Wheat | plastid | 86.31 | 85.34 |
| TraesCSU01G167700.1 | Wheat | plastid | 85.93 | 85.28 |
| TraesCS5A01G454200.1 | Wheat | plastid | 85.93 | 84.96 |
| TraesCS5D01G464800.1 | Wheat | plastid | 85.93 | 84.96 |
| TraesCS5A01G350600.1 | Wheat | plastid | 85.55 | 84.91 |
| TraesCS5B01G353200.1 | Wheat | plastid | 85.55 | 84.91 |
| TraesCS1D01G375100.1 | Wheat | plastid | 85.55 | 84.91 |
| TraesCS5D01G357600.1 | Wheat | plastid | 85.55 | 84.91 |
| TraesCS6A01G094300.1 | Wheat | plastid | 85.55 | 84.59 |
| TraesCS1B01G432700.1 | Wheat | plastid | 85.55 | 84.59 |
| TraesCS1A01G403800.1 | Wheat | plastid | 85.55 | 84.59 |
| TraesCS7B01G103300.1 | Wheat | plastid | 85.55 | 84.59 |
| TraesCS1A01G403300.1 | Wheat | plastid | 85.55 | 84.59 |
| TraesCS1D01G411600.1 | Wheat | plastid | 85.55 | 84.59 |
| TraesCS6A01G094600.1 | Wheat | plastid | 82.13 | 84.38 |
| TraesCS1B01G317500.1 | Wheat | plastid | 49.05 | 84.31 |
| TraesCS1D01G411300.1 | Wheat | plastid | 85.17 | 84.21 |
| TraesCS7D01G199400.1 | Wheat | plastid | 85.17 | 84.21 |
| TraesCS6D01G088800.1 | Wheat | plastid | 85.17 | 84.21 |
| TraesCS1B01G388200.1 | Wheat | plastid | 84.79 | 84.15 |
| TraesCSU01G250000.1 | Wheat | plastid | 84.79 | 83.83 |
| TraesCS6B01G122800.1 | Wheat | plastid | 84.79 | 83.83 |
| TraesCS1D01G374900.1 | Wheat | plastid | 84.41 | 83.77 |
| TraesCS1B01G388500.1 | Wheat | plastid | 84.41 | 83.77 |
| TraesCS6D01G088600.1 | Wheat | plastid | 84.41 | 83.46 |
| TraesCS6A01G094100.1 | Wheat | plastid | 84.41 | 83.46 |
| TraesCS7B01G103400.1 | Wheat | plastid | 84.41 | 83.46 |
| TraesCS1D01G375000.1 | Wheat | plastid | 75.67 | 83.26 |
| TraesCS6A01G093700.1 | Wheat | plastid | 84.03 | 83.08 |
| TraesCS7A01G238400.1 | Wheat | plastid | 84.03 | 83.08 |
| TraesCS1B01G388300.1 | Wheat | plastid | 83.65 | 83.02 |
| TraesCS5B01G462900.1 | Wheat | plastid | 63.5 | 81.86 |
| TraesCS7D01G199500.1 | Wheat | plastid | 82.51 | 81.58 |
| TraesCS6B01G122600.1 | Wheat | plastid | 81.75 | 80.83 |
| VIT_12s0057g00630.t01 | Wine grape | plastid | 81.37 | 80.75 |
| TraesCS7A01G237100.1 | Wheat | plastid | 81.37 | 80.45 |
| TraesCS6D01G088700.1 | Wheat | plastid | 70.34 | 80.43 |
| PGSC0003DMT400034902 | Potato | plastid | 38.78 | 77.86 |
| TraesCS6A01G094500.1 | Wheat | plastid | 84.79 | 73.11 |
| VIT_00s0181g00200.t01 | Wine grape | plastid | 70.34 | 68.77 |
| VIT_00s0181g00180.t01 | Wine grape | plastid | 69.96 | 68.4 |
| TraesCS6A01G094200.1 | Wheat | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 84.79 | 68.2 |
| VIT_19s0014g03660.t01 | Wine grape | plastid | 68.44 | 67.67 |
| TraesCS6A01G094400.1 | Wheat | plastid | 84.79 | 66.97 |
| TraesCS1D01G375200.1 | Wheat | plastid | 38.02 | 64.94 |
| KXG33266 | Sorghum | extracellular | 48.67 | 55.41 |
| VIT_13s0019g04140.t01 | Wine grape | plastid | 34.22 | 36.89 |
| VIT_18s0122g00430.t01 | Wine grape | plastid | 44.11 | 35.05 |
| VIT_11s0016g00730.t01 | Wine grape | plastid | 33.46 | 33.98 |
| VIT_01s0010g03620.t01 | Wine grape | plastid | 33.84 | 32.84 |
| VIT_17s0000g06350.t01 | Wine grape | plastid | 31.18 | 32.54 |
| VIT_15s0024g00040.t01 | Wine grape | plastid | 33.08 | 31.75 |
| VIT_18s0001g10550.t01 | Wine grape | plastid | 30.42 | 30.3 |
| VIT_18s0089g01170.t01 | Wine grape | cytosol, extracellular, plastid | 45.63 | 29.85 |
| VIT_12s0055g01110.t01 | Wine grape | plastid | 27.38 | 28.02 |
| VIT_08s0007g02190.t01 | Wine grape | plastid | 34.98 | 26.9 |
Protein Annotations
| MapMan:1.1.1.1.1 | Gene3D:1.10.3460.10 | EntrezGene:100252066 | wikigene:100252066 | ProteinID:CCB60056 | ProteinID:CCB60056.1 |
| InterPro:Chloro_AB-bd_pln | InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | UniProt:F6HZE1 | EMBL:FN596502 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009416 | GO:GO:0009507 | GO:GO:0009522 |
| GO:GO:0009523 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009765 |
| GO:GO:0009768 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0031409 | InterPro:IPR023329 |
| EntrezGene:LOC100252066 | wikigene:LOC100252066 | PFAM:PF00504 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF55 | SUPFAM:SSF103511 |
| TIGR:TC53968 | UniParc:UPI00015CA72A | ArrayExpress:VIT_07s0005g02220 | EnsemblPlantsGene:VIT_07s0005g02220 | EnsemblPlants:VIT_07s0005g02220.t01 | unigene:Vvi.5233 |
| RefSeq:XP_002273106 | RefSeq:XP_002273106.2 | : | : | : | : |
Description
Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:F6HZE1]
Coordinates
chr7:-:4605071..4605897
Molecular Weight (calculated)
28172.8 Da
IEP (calculated)
5.098
GRAVY (calculated)
-0.001
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MATMALSSPF VGKVVPLNPG TEFSSKVRGD GRISMRKSFA KPSGSPWYGP DRVKYLGPFS GEPPSYLTGE FPGDYGWDTA GLSADPETFA KNRELEVIHC
101: RWAMLGALGC VFPELLSRNG VKFGEAVWFK AGAQIFSEGG LDYLGNPGLV HAQSILAIWA CQVILMGAVE GYRIGGGPLG EVIDPLYPGG SFDPLGLADD
201: PEAFAELKVK EIKNGRLAMF SMFGFFVQAI VTGKGPLENL ADHLADPVNN NAWAYATNFV PGK
101: RWAMLGALGC VFPELLSRNG VKFGEAVWFK AGAQIFSEGG LDYLGNPGLV HAQSILAIWA CQVILMGAVE GYRIGGGPLG EVIDPLYPGG SFDPLGLADD
201: PEAFAELKVK EIKNGRLAMF SMFGFFVQAI VTGKGPLENL ADHLADPVNN NAWAYATNFV PGK
001: MAASTMALSS PAFAGKAVKL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
Arabidopsis Description
LHCB1.3Chlorophyll a-b binding protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P04778]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.