Factsheet for TraesCS1D01G411600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430
plastid: 22736107

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G433300.1	Wheat	plastid	98.87	98.87
TraesCS1A01G403800.1	Wheat	plastid	97.74	97.74
TraesCS5D01G464900.1	Wheat	plastid	96.24	96.24
HORVU1Hr1G088900.1	Barley	plastid	96.24	96.24
TraesCS5D01G464700.1	Wheat	plastid	96.24	96.24
TraesCS6D01G088800.1	Wheat	plastid	96.24	96.24
GSMUA_Achr5P09230_001	Banana	cytosol, extracellular, plastid	47.37	94.74
TraesCS5D01G464800.1	Wheat	plastid	94.74	94.74
TraesCS7D01G199400.1	Wheat	plastid	94.74	94.74
TraesCS1D01G411300.1	Wheat	plastid	94.36	94.36
TraesCS1D01G374900.1	Wheat	plastid	93.98	94.34
TraesCS6D01G088600.1	Wheat	plastid	93.98	93.98
TraesCS1D01G375000.1	Wheat	plastid	84.21	93.72
TraesCS1D01G375100.1	Wheat	plastid	93.23	93.58
TraesCS7D01G199500.1	Wheat	plastid	92.48	92.48
TraesCS6D01G088700.1	Wheat	plastid	79.7	92.17
TraesCS1D01G306200.1	Wheat	plastid	90.6	91.64
TraesCS7D01G276300.1	Wheat	plastid	88.72	90.42
TraesCS5D01G357600.1	Wheat	plastid	89.85	90.19
Os01t0720500-01	Rice	plastid	89.47	89.81
VIT_19s0014g00160.t01	Wine grape	plastid	89.85	89.51
GSMUA_Achr2P09300_001	Banana	plasma membrane, plastid, unclear	89.47	89.14
VIT_10s0003g02890.t01	Wine grape	plastid	88.35	89.02
VIT_10s0003g02900.t01	Wine grape	plastid	87.59	88.26
VIT_12s0028g00320.t01	Wine grape	plastid	87.22	85.93
VIT_07s0005g02220.t01	Wine grape	plastid	84.59	85.55
PGSC0003DMT400034902	Potato	plastid	41.73	84.73
GSMUA_Achr4P07890_001	Banana	plastid	49.62	83.02
HORVU1Hr1G089180.1	Barley	plastid	97.74	82.02
TraesCS1D01G375200.1	Wheat	plastid	45.11	77.92
TraesCS5D01G329200.1	Wheat	plastid	73.31	74.14
TraesCS1D01G428200.1	Wheat	plastid	66.54	66.04
TraesCS4D01G086400.1	Wheat	plastid	45.11	41.96
TraesCS7D01G227300.1	Wheat	plastid	34.59	37.55
TraesCS5D01G182000.1	Wheat	plastid	41.73	35.81
TraesCS2D01G200700.1	Wheat	plastid	34.21	35.69
TraesCS6D01G299200.1	Wheat	plastid	33.83	35.43
TraesCS5D01G219100.1	Wheat	plastid	33.46	32.36
TraesCS6D01G152700.1	Wheat	golgi	31.58	31.23
TraesCS5D01G238300.1	Wheat	mitochondrion, plastid	28.2	30.61
TraesCS2D01G320900.1	Wheat	plastid	29.32	30.59
TraesCS2D01G209900.1	Wheat	plastid	32.71	30.42

Protein Annotations

EnsemblPlants:TraesCS1D01G411600.1	EnsemblPlantsGene:TraesCS1D01G411600	Gene3D:1.10.3460.10	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	InterPro:IPR023329	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56	PFAM:PF00504
SUPFAM:SSF103511	MapMan:1.1.1.1.1	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:473034158..473034958

Molecular Weight (calculated)

28314.9 Da

IEP (calculated)

5.085

GRAVY (calculated)

0.079

Length

266 amino acids

Sequence
(BLAST)

001: MAATTMSLSS SYLAGKAVKN LPSSALIGEA RVNMRKTAAK AKQVSSSSPW YGSDRVLYLG PLSGEPPSYL TGEFPGDYGW DTAGLSADPE TFAKNRELEV
101: IHCRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS EGGLDYLGNP SLVHAQSILA IWACQVVLMG AVEGYRIAGG PLGEIVDPLY PGGSFDPLGL
201: ADDPEAFAEL KVKEIKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHIADP VNNNAWAFAT NFVPGK

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.