Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22160430
golgi: 25769308 |
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G451100.1 | Wheat | plastid | 100.0 | 100.0 |
| TraesCS2A01G204800.1 | Wheat | plastid | 99.63 | 99.63 |
| HORVU2Hr1G040780.7 | Barley | plastid | 97.39 | 95.96 |
| OQU90095 | Sorghum | plastid | 92.54 | 92.54 |
| Zm00001d021784_P001 | Maize | plastid | 92.54 | 92.19 |
| Os07t0562700-01 | Rice | extracellular, plastid | 86.57 | 87.22 |
| Solyc12g011450.1.1 | Tomato | plastid | 85.45 | 86.42 |
| GSMUA_AchrUn_... | Banana | plastid | 74.25 | 86.15 |
| AT5G54270.1 | Thale cress | plastid | 85.07 | 86.04 |
| PGSC0003DMT400022072 | Potato | plastid | 85.07 | 86.04 |
| Solyc07g063600.2.1 | Tomato | nucleus | 83.96 | 85.88 |
| PGSC0003DMT400049550 | Potato | plastid | 83.96 | 85.88 |
| Bra002999.1-P | Field mustard | plastid | 84.7 | 85.66 |
| CDY66572 | Canola | cytosol, extracellular, plastid | 45.52 | 85.31 |
| KRH22164 | Soybean | nucleus, plastid | 84.33 | 84.64 |
| CDY14320 | Canola | plastid | 73.88 | 84.62 |
| KRH27171 | Soybean | mitochondrion, nucleus, plastid | 84.33 | 84.33 |
| VIT_19s0014g03660.t01 | Wine grape | plastid | 83.58 | 84.21 |
| CDY18320 | Canola | plastid | 73.51 | 84.19 |
| GSMUA_Achr1P08770_001 | Banana | plastid, unclear | 75.37 | 83.82 |
| CDY52238 | Canola | plastid | 72.76 | 83.33 |
| VIT_00s0181g00180.t01 | Wine grape | plastid | 82.09 | 81.78 |
| VIT_00s0181g00200.t01 | Wine grape | plastid | 81.72 | 81.41 |
| CDY28778 | Canola | plastid | 70.9 | 74.22 |
| TraesCS5D01G329200.1 | Wheat | plastid | 69.4 | 70.72 |
| TraesCS7D01G276300.1 | Wheat | plastid | 68.28 | 70.11 |
| TraesCS1D01G306200.1 | Wheat | plastid | 67.91 | 69.2 |
| TraesCS5D01G357600.1 | Wheat | plastid | 67.54 | 68.3 |
| TraesCS5D01G464700.1 | Wheat | plastid | 67.16 | 67.67 |
| TraesCS1D01G375100.1 | Wheat | plastid | 66.79 | 67.55 |
| TraesCS1D01G411300.1 | Wheat | plastid | 66.79 | 67.29 |
| TraesCS7D01G199400.1 | Wheat | plastid | 66.79 | 67.29 |
| TraesCS5D01G464800.1 | Wheat | plastid | 66.79 | 67.29 |
| TraesCS6D01G088800.1 | Wheat | plastid | 66.42 | 66.92 |
| TraesCS5D01G464900.1 | Wheat | plastid | 66.42 | 66.92 |
| TraesCS1D01G374900.1 | Wheat | plastid | 66.04 | 66.79 |
| TraesCS1D01G411600.1 | Wheat | plastid | 66.04 | 66.54 |
| TraesCS1D01G375000.1 | Wheat | plastid | 58.96 | 66.11 |
| TraesCS6D01G088600.1 | Wheat | plastid | 64.93 | 65.41 |
| TraesCS7D01G199500.1 | Wheat | plastid | 63.81 | 64.29 |
| TraesCS6D01G088700.1 | Wheat | plastid | 53.73 | 62.61 |
| Zm00001d006592_P001 | Maize | plastid | 26.49 | 57.72 |
| TraesCS1D01G375200.1 | Wheat | plastid | 29.48 | 51.3 |
| TraesCS4D01G086400.1 | Wheat | plastid | 42.91 | 40.21 |
| TraesCS5D01G182000.1 | Wheat | plastid | 41.04 | 35.48 |
| TraesCS7D01G227300.1 | Wheat | plastid | 32.09 | 35.1 |
| TraesCS2D01G200700.1 | Wheat | plastid | 32.09 | 33.73 |
| TraesCS6D01G299200.1 | Wheat | plastid | 31.34 | 33.07 |
| TraesCS5D01G238300.1 | Wheat | mitochondrion, plastid | 29.48 | 32.24 |
| TraesCS6D01G152700.1 | Wheat | golgi | 31.72 | 31.6 |
| TraesCS2D01G209900.1 | Wheat | plastid | 33.21 | 31.12 |
| TraesCS5D01G219100.1 | Wheat | plastid | 31.72 | 30.91 |
| TraesCS2D01G320900.1 | Wheat | plastid | 28.36 | 29.8 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G428200.1 | EnsemblPlantsGene:TraesCS1D01G428200 | Gene3D:1.10.3460.10 | GO:GO:0005575 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009765 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | InterPro:Chloro_AB-bd_pln |
| InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | InterPro:IPR023329 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF11 | PFAM:PF00504 |
| SUPFAM:SSF103511 | MapMan:1.1.1.1.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:480517074..480517988
Molecular Weight (calculated)
28730.3 Da
IEP (calculated)
4.758
GRAVY (calculated)
0.098
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTIMAAAS RAVVAKTPFL SGQGRAASAS PLRDIAAAAN GRITMGNDLW YGPDRVKYLG PFSAQTPSYL NGEFPGDYGW DTAGLSADPE AFARNRALEV
101: IHGRWAMLGA LGCVFPEVLQ KWVGVEFKEP VWFKAGSQIF SEGGLDYLGN PNLVHAQSIL AVLGFQVLLM GLVEGFRING LDGVGEGNDL YPGGQYFDPL
201: GLADDPVTFA ELKVKEIKNG RLAMFSMFGF FVQAIVTGKG PLENLFDHLD DPVANNAWVF ATKFAPGS
101: IHGRWAMLGA LGCVFPEVLQ KWVGVEFKEP VWFKAGSQIF SEGGLDYLGN PNLVHAQSIL AVLGFQVLLM GLVEGFRING LDGVGEGNDL YPGGQYFDPL
201: GLADDPVTFA ELKVKEIKNG RLAMFSMFGF FVQAIVTGKG PLENLFDHLD DPVANNAWVF ATKFAPGS
001: MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA
Arabidopsis Description
LHCB3Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.