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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • extracellular 1
  • cytosol 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular, plastid
Any Predictor:cytosol, extracellular, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:extracellular
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY52238 Canola plastid 92.31 56.41
CDY14320 Canola plastid 91.61 55.98
CDY18320 Canola plastid 90.91 55.56
CDY30369 Canola plastid 58.04 54.61
CDY17250 Canola mitochondrion, plastid 58.04 50.92
AT5G54270.1 Thale cress plastid 91.61 49.43
TraesCS2A01G204800.1 Wheat plastid 85.31 45.52
TraesCS1D01G428200.1 Wheat plastid 85.31 45.52
TraesCS1B01G451100.1 Wheat plastid 85.31 45.52
Os07t0562700-01 Rice extracellular, plastid 84.62 45.49
CDY28778 Canola plastid 80.42 44.92
HORVU2Hr1G040780.7 Barley plastid 85.31 44.85
CDX83967 Canola extracellular, vacuole 6.29 39.13
CDY17247 Canola plastid 69.93 37.59
CDY17248 Canola plastid 69.93 37.59
CDX79562 Canola plastid 69.93 37.59
CDX84316 Canola plastid 69.93 37.59
CDX84647 Canola plastid 69.93 37.59
CDX90218 Canola plastid 69.93 37.45
CDY66768 Canola plastid 69.93 37.45
CDY43676 Canola plastid 69.93 37.45
CDY35271 Canola plastid 69.93 37.45
CDY26306 Canola plastid 69.93 37.45
CDX99866 Canola plastid 69.93 37.45
CDX93077 Canola plastid 69.23 37.36
CDY15050 Canola plastid 69.23 37.36
CDY43198 Canola plastid 69.23 37.08
CDX98158 Canola plastid 69.23 37.08
CDY20039 Canola plastid 68.53 36.98
CDY00149 Canola plastid 68.53 36.84
CDY49770 Canola plastid 68.53 36.84
CDY13732 Canola plastid 68.53 36.84
CDY03989 Canola plastid 68.53 36.84
CDX83726 Canola plastid 67.13 36.09
CDX84315 Canola plastid 69.93 30.4
CDX90755 Canola plastid 49.65 25.36
CDY05098 Canola plastid 49.65 25.36
CDY60092 Canola plastid 48.95 24.91
CDY26347 Canola plastid 41.26 23.14
CDY43936 Canola plastid 39.86 22.27
CDX89120 Canola plastid 39.86 22.27
CDX78277 Canola plastid 37.06 21.99
CDY57375 Canola plastid 41.26 21.77
CDY12903 Canola plastid 41.26 21.77
CDY15020 Canola plastid 41.26 21.77
CDY51572 Canola plastid 39.16 21.62
CDY47581 Canola plastid 41.26 21.61
CDY03835 Canola plastid 41.26 21.61
CDX73435 Canola plastid 36.36 21.58
CDX67613 Canola plastid 36.36 21.58
CDY07517 Canola plastid 36.36 21.58
CDX99044 Canola plastid 37.06 21.03
CDY47410 Canola plastid 37.06 21.03
CDY43213 Canola mitochondrion, plastid 35.66 19.77
CDY17055 Canola mitochondrion, plastid 34.97 19.38
CDY45980 Canola plastid 41.26 18.21
CDY04834 Canola plastid 36.36 18.12
CDY44667 Canola plastid 36.36 18.06
CDX83783 Canola plastid 33.57 18.05
CDX96677 Canola plastid 33.57 18.05
CDY53084 Canola plastid 36.36 17.99
CDY20401 Canola plastid 40.56 17.74
CDX96833 Canola plastid 30.07 16.6
CDY33376 Canola plastid 29.37 16.28
CDY35042 Canola plastid 29.37 16.28
CDX83966 Canola plastid 25.87 16.23
CDX81735 Canola plastid 29.37 16.22
CDY52865 Canola plastid 29.37 16.22
CDX74808 Canola plastid 30.77 15.94
CDY20518 Canola plastid 30.07 15.58
CDX86864 Canola plastid 20.98 14.35
CDY61708 Canola plastid 32.17 13.14
Protein Annotations
Gene3D:1.10.3460.10MapMan:35.1GO:A0A078JMG6UniProt:A0A078JMG6EnsemblPlants:CDY66572ProteinID:CDY66572
ProteinID:CDY66572.1InterPro:Chloro_AB-bd_plnInterPro:Chloroa_b-bindInterPro:Chlorophyll_a/b-bd_dom_sfGO:GO:0003674GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006091GO:GO:0006464
GO:GO:0008150GO:GO:0008152GO:GO:0009507GO:GO:0009522GO:GO:0009523GO:GO:0009535
GO:GO:0009536GO:GO:0009579GO:GO:0009765GO:GO:0009987GO:GO:0015979GO:GO:0016020
GO:GO:0016021GO:GO:0016168GO:GO:0018298GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00054581001InterPro:IPR023329
PFAM:PF00504PANTHER:PTHR21649PANTHER:PTHR21649:SF11SUPFAM:SSF103511UniParc:UPI0004EDDF8D:
Description
BnaC02g44700DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078JMG6]
Coordinates
chrLK035335:-:10440..10958
Molecular Weight (calculated)
15601.0 Da
IEP (calculated)
8.509
GRAVY (calculated)
0.130
Length
143 amino acids
Sequence
(BLAST)
001: MIISQVIHGR WGMLGAFGCI TPEVLQKWVR VDFKELVWFK AGSQIFSKGG FRINGLDGVG KGNDLHPGGQ YFDPLGLADD PATFAELKVK EIKNGRLAMF
101: SMFGFFVQAI VTGKGPLENL LDHLDNPVAN SAWAFATKFV PGA
Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)
001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
Arabidopsis Description
LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.