CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74808	Canola	plastid	97.46	97.46
AT2G40100.1	Thale cress	plastid	90.22	90.22
KRG97750	Soybean	plastid	74.64	74.1
KRH31130	Soybean	nucleus, plastid	74.28	72.69
CDY04834	Canola	plastid	70.29	67.6
CDY44667	Canola	plastid	69.2	66.32
CDY53084	Canola	plastid	69.2	66.09
CDY61708	Canola	plastid	68.12	53.71
CDX83967	Canola	extracellular, vacuole	3.26	39.13
CDX67613	Canola	plastid	32.61	37.34
CDY07517	Canola	plastid	32.61	37.34
CDX73435	Canola	plastid	32.61	37.34
CDX78277	Canola	plastid	32.61	37.34
CDY43936	Canola	plastid	31.52	33.98
CDY51572	Canola	plastid	31.52	33.59
CDX83966	Canola	plastid	27.54	33.33
CDY33376	Canola	plastid	31.16	33.33
CDY52865	Canola	plastid	31.16	33.2
CDX81735	Canola	plastid	31.16	33.2
CDX89120	Canola	plastid	30.8	33.2
CDY35042	Canola	plastid	30.8	32.95
CDY30369	Canola	plastid	18.12	32.89
CDY47410	Canola	plastid	29.71	32.54
CDX99044	Canola	plastid	29.71	32.54
CDX79562	Canola	plastid	31.16	32.33
CDY17248	Canola	plastid	31.16	32.33
CDY17247	Canola	plastid	31.16	32.33
CDX84316	Canola	plastid	31.16	32.33
CDX84647	Canola	plastid	31.16	32.33
CDY43198	Canola	plastid	31.16	32.21
CDY66768	Canola	plastid	30.8	31.84
CDX90218	Canola	plastid	30.8	31.84
CDY43676	Canola	plastid	30.8	31.84
CDY35271	Canola	plastid	30.8	31.84
CDX98158	Canola	plastid	30.8	31.84
CDX99866	Canola	plastid	30.8	31.84
CDY26306	Canola	plastid	30.8	31.84
CDX96833	Canola	plastid	29.35	31.27
CDX83783	Canola	plastid	30.07	31.2
CDX96677	Canola	plastid	30.07	31.2
CDY66572	Canola	cytosol, extracellular, plastid	15.58	30.07
CDY17250	Canola	mitochondrion, plastid	17.39	29.45
CDY20039	Canola	plastid	27.54	28.68
CDX93077	Canola	plastid	27.54	28.68
CDY15050	Canola	plastid	27.54	28.68
CDX83726	Canola	plastid	27.54	28.57
CDY13732	Canola	plastid	27.54	28.57
CDX90755	Canola	plastid	28.99	28.57
CDY49770	Canola	plastid	27.54	28.57
CDY05098	Canola	plastid	28.99	28.57
CDY00149	Canola	plastid	27.54	28.57
CDY03989	Canola	plastid	27.17	28.2
CDY60092	Canola	plastid	28.62	28.11
CDY12903	Canola	plastid	27.54	28.04
CDY57375	Canola	plastid	27.54	28.04
CDY15020	Canola	plastid	27.54	28.04
CDY17055	Canola	mitochondrion, plastid	26.09	27.91
CDY43213	Canola	mitochondrion, plastid	26.09	27.91
CDY47581	Canola	plastid	27.54	27.84
CDY03835	Canola	plastid	27.54	27.84
CDY18320	Canola	plastid	23.19	27.35
CDY14320	Canola	plastid	22.83	26.92
CDY52238	Canola	plastid	22.83	26.92
CDY26347	Canola	plastid	24.64	26.67
CDX84315	Canola	plastid	30.8	25.84
CDX86864	Canola	plastid	19.2	25.36
CDY20401	Canola	plastid	29.35	24.77
CDY45980	Canola	plastid	28.62	24.38
CDY28778	Canola	plastid	21.38	23.05

Protein Annotations

MapMan:1.1.1.1.2	Gene3D:1.10.3460.10	GO:A0A078G7F6	UniProt:A0A078G7F6	EnsemblPlants:CDY20518	ProteinID:CDY20518
ProteinID:CDY20518.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00012630001	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF32	SUPFAM:SSF103511	UniParc:UPI0004EAF280	SEG:seg

Description

BnaC04g05260DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078G7F6]

Coordinates

chrLK032108:+:673503..675791

Molecular Weight (calculated)

30093.1 Da

IEP (calculated)

5.166

GRAVY (calculated)

-0.121

Length

276 amino acids

Sequence
(BLAST)

001: MATTTAAAAS GIFGIRIQDP SSGAGRVQAK FNFSFGKKKP APPPKKTKQI QNDGDRLVWF PGANPPEWLD GSMIGDRGFD PFGLGKPAEY LQYDFDGLDQ
101: NLAKNVAGGL LGVRQESKEI NPTPFQPYTE VFGIERFREC ELIHGRWAML GTLGALAVEG LTGIAWQDAG KVELVEGSSY LGQPLPFSLT TLIWIEVLVV
201: GYIEFQRNAE LDPEKRIYPG GYFDPLGLGS DPEKLDTLKL AEIKHSRLAM IAFLIFSLQA AFTGKGPISF LATFSS

Best Arabidopsis Sequence Match ( AT2G40100.1 )
(BLAST)

001: MATTTAAAAS GIFGIRIQDP RPGTGRVQAR FGFSFGKKKP APPPKKSRQV QDDGDRLVWF PGANPPEWLD GSMIGDRGFD PFGLGKPAEY LQYDFDGLDQ
101: NLAKNVAGDI IGIIQESSEI KPTPFQPYTE VFGIQRFREC ELIHGRWAML GTLGAIAVEA LTGIAWQDAG KVELVEGSSY LGQPLPFSLT TLIWIEVLVV
201: GYIEFQRNSE LDPEKRIYPG GYFDPLGLAA DPEKLDTLKL AEIKHSRLAM VAFLIFALQA AFTGKGPVSF LATFNN

Arabidopsis Description

LHCB4.3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VTY4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.