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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 8
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra005424.1-P Field mustard cytosol, extracellular, plastid 60.53 100.0
CDY17247 Canola plastid 99.62 99.62
CDY17248 Canola plastid 98.87 98.87
CDX84647 Canola plastid 98.12 98.12
CDX79562 Canola plastid 97.74 97.74
CDY30369 Canola plastid 55.26 96.71
CDY35271 Canola plastid 96.62 96.25
CDX90218 Canola plastid 96.62 96.25
GSMUA_Achr10P... Banana cytosol, extracellular, plastid 48.12 96.24
CDY66768 Canola plastid 96.24 95.88
CDY43676 Canola plastid 96.24 95.88
CDY26306 Canola plastid 95.86 95.51
CDY43198 Canola plastid 95.11 94.76
CDX99866 Canola plastid 94.74 94.38
CDX98158 Canola plastid 93.98 93.63
CDY17250 Canola mitochondrion, plastid 49.62 80.98
CDX84315 Canola plastid 97.37 78.72
CDY15050 Canola plastid 75.19 75.47
CDX93077 Canola plastid 75.19 75.47
CDY20039 Canola plastid 74.44 74.72
CDY49770 Canola plastid 74.44 74.44
CDY13732 Canola plastid 74.44 74.44
CDY00149 Canola plastid 74.06 74.06
CDY03989 Canola plastid 74.06 74.06
CDX83726 Canola plastid 73.68 73.68
CDY66572 Canola cytosol, extracellular, plastid 37.59 69.93
CDY52238 Canola plastid 59.02 67.09
CDY14320 Canola plastid 59.02 67.09
CDY18320 Canola plastid 58.65 66.67
CDY28778 Canola plastid 58.27 60.55
CDY05098 Canola plastid 42.48 40.36
CDX73435 Canola plastid 36.47 40.25
CDX90755 Canola plastid 42.11 40.0
CDX67613 Canola plastid 36.09 39.83
CDX78277 Canola plastid 36.09 39.83
CDY07517 Canola plastid 36.09 39.83
CDY60092 Canola plastid 41.73 39.5
CDX83967 Canola extracellular, vacuole 3.38 39.13
CDY43936 Canola plastid 35.34 36.72
CDX89120 Canola plastid 34.96 36.33
CDY51572 Canola plastid 34.21 35.14
CDY45980 Canola plastid 41.73 34.26
CDY44667 Canola plastid 36.84 34.03
CDY53084 Canola plastid 36.84 33.91
CDY20401 Canola plastid 41.35 33.64
CDX83783 Canola plastid 33.46 33.46
CDX96677 Canola plastid 33.46 33.46
CDY04834 Canola plastid 36.09 33.45
CDY12903 Canola plastid 33.83 33.21
CDY57375 Canola plastid 33.83 33.21
CDX86864 Canola plastid 25.94 33.01
CDY15020 Canola plastid 33.46 32.84
CDY47581 Canola plastid 33.08 32.23
CDY03835 Canola plastid 33.08 32.23
CDY47410 Canola plastid 30.45 32.14
CDX99044 Canola plastid 30.45 32.14
CDX74808 Canola plastid 33.08 31.88
CDY26347 Canola plastid 30.45 31.76
CDX81735 Canola plastid 30.45 31.27
CDY20518 Canola plastid 32.33 31.16
CDY52865 Canola plastid 30.08 30.89
CDX96833 Canola plastid 29.7 30.5
CDY43213 Canola mitochondrion, plastid 29.32 30.23
CDY35042 Canola plastid 29.32 30.23
CDY33376 Canola plastid 29.32 30.23
CDY17055 Canola mitochondrion, plastid 28.95 29.84
CDX83966 Canola plastid 24.44 28.51
CDY61708 Canola plastid 27.82 21.14
Protein Annotations
MapMan:1.1.1.1.1Gene3D:1.10.3460.10GO:A0A078D4P7EnsemblPlants:CDX84316ProteinID:CDX84316ProteinID:CDX84316.1
InterPro:Chloro_AB-bd_plnInterPro:Chloroa_b-bindInterPro:Chlorophyll_a/b-bd_dom_sfGO:GO:0005575GO:GO:0006091GO:GO:0008150
GO:GO:0008152GO:GO:0009765GO:GO:0009987GO:GO:0015979GO:GO:0016020EnsemblPlantsGene:GSBRNA2T00141425001
InterPro:IPR023329PFAM:PF00504PANTHER:PTHR21649PANTHER:PTHR21649:SF55SUPFAM:SSF103511UniParc:UPI0002081A18
SEG:seg:::::
Description
BnaC04g10780D
Coordinates
chrLK031836:+:1775244..1776415
Molecular Weight (calculated)
28185.7 Da
IEP (calculated)
4.925
GRAVY (calculated)
0.066
Length
266 amino acids
Sequence
(BLAST)
001: MAASTMALSS LALAGKAVKL SPGASEVFGT ARVTMRKTVK PTGPSGSPWY GSDRVKYLGP FSGEPPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HCRWAMLGAL GCVFPELLAR NGVKFGEAVW FKAGSQIFSE GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGDG PLGEAEDLLY PGGSFDPLGL
201: AADPEAFAEL KVKEIKNGRL AMFSMFGFFV QAIVTGKGPL ENLADHLADP VNNNAWAFAT NFVPGK
Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)
001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
Arabidopsis Description
LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.