CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026745.1-P	Field mustard	plastid	98.84	98.84
CDY52865	Canola	plastid	98.84	98.84
CDY35042	Canola	plastid	96.53	96.9
CDX83967	Canola	extracellular, vacuole	8.49	95.65
CDY33376	Canola	plastid	94.98	95.35
CDX96833	Canola	plastid	94.98	94.98
KRH10515	Soybean	mitochondrion, nucleus, plastid	83.4	83.08
KRH43915	Soybean	mitochondrion, nucleus, plastid	83.4	82.76
CDX83966	Canola	plastid	72.59	82.46
VIT_12s0055g01110.t01	Wine grape	plastid	80.31	80.93
Solyc01g105050.2.1	Tomato	plastid	79.92	80.86
PGSC0003DMT400032790	Potato	plastid	79.15	80.08
PGSC0003DMT400032791	Potato	plastid	77.99	78.91
Solyc01g105030.2.1	Tomato	plastid	77.99	78.91
CDX89120	Canola	plastid	33.98	34.38
CDY43936	Canola	plastid	33.98	34.38
CDY51572	Canola	plastid	34.36	34.36
CDX83783	Canola	plastid	35.14	34.21
CDX96677	Canola	plastid	35.14	34.21
CDX67613	Canola	plastid	31.27	33.61
CDY07517	Canola	plastid	31.27	33.61
CDX73435	Canola	plastid	31.27	33.61
CDX78277	Canola	plastid	30.89	33.2
CDY43213	Canola	mitochondrion, plastid	32.82	32.95
CDY17055	Canola	mitochondrion, plastid	32.43	32.56
CDX74808	Canola	plastid	33.98	31.88
CDY20518	Canola	plastid	33.2	31.16
CDY17248	Canola	plastid	31.66	30.83
CDX79562	Canola	plastid	31.27	30.45
CDX84316	Canola	plastid	31.27	30.45
CDX84647	Canola	plastid	31.27	30.45
CDY17247	Canola	plastid	31.27	30.45
CDY18320	Canola	plastid	27.41	30.34
CDY26306	Canola	plastid	31.27	30.34
CDY35271	Canola	plastid	31.27	30.34
CDY43676	Canola	plastid	31.27	30.34
CDX90218	Canola	plastid	31.27	30.34
CDY66768	Canola	plastid	31.27	30.34
CDX99866	Canola	plastid	31.27	30.34
CDX99044	Canola	plastid	29.34	30.16
CDY47410	Canola	plastid	29.34	30.16
CDY04834	Canola	plastid	33.2	29.97
CDX98158	Canola	plastid	30.89	29.96
CDY43198	Canola	plastid	30.89	29.96
CDY14320	Canola	plastid	27.03	29.91
CDY44667	Canola	plastid	33.2	29.86
CDY53084	Canola	plastid	33.2	29.76
CDY52238	Canola	plastid	26.64	29.49
CDY66572	Canola	cytosol, extracellular, plastid	16.22	29.37
CDY30369	Canola	plastid	16.99	28.95
CDY47581	Canola	plastid	30.12	28.57
CDY03835	Canola	plastid	30.12	28.57
CDY17250	Canola	mitochondrion, plastid	17.76	28.22
CDY15020	Canola	plastid	29.34	28.04
CDY12903	Canola	plastid	29.34	28.04
CDY26347	Canola	plastid	27.41	27.84
CDY57375	Canola	plastid	28.96	27.68
CDY15050	Canola	plastid	27.41	26.79
CDX93077	Canola	plastid	27.41	26.79
CDY20039	Canola	plastid	27.03	26.42
CDY13732	Canola	plastid	27.03	26.32
CDX83726	Canola	plastid	27.03	26.32
CDY03989	Canola	plastid	27.03	26.32
CDY49770	Canola	plastid	27.03	26.32
CDY00149	Canola	plastid	27.03	26.32
CDY28778	Canola	plastid	24.71	25.0
CDX90755	Canola	plastid	26.64	24.64
CDY05098	Canola	plastid	26.64	24.64
CDX84315	Canola	plastid	31.27	24.62
CDY60092	Canola	plastid	26.64	24.56
CDY45980	Canola	plastid	27.41	21.91
CDY20401	Canola	plastid	27.41	21.71
CDX86864	Canola	plastid	16.99	21.05
CDY61708	Canola	plastid	25.1	18.57

Protein Annotations

MapMan:1.1.1.1.4	Gene3D:1.10.3460.10	GO:A0A078CY13	EnsemblPlants:CDX81735	ProteinID:CDX81735	ProteinID:CDX81735.1
InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	EnsemblPlantsGene:GSBRNA2T00136666001
InterPro:IPR023329	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF28	SUPFAM:SSF103511	UniParc:UPI0004EE80D9
SEG:seg	:	:	:	:	:

Description

BnaC08g38660D

Coordinates

chrLK031826:-:568254..569445

Molecular Weight (calculated)

27730.3 Da

IEP (calculated)

9.342

GRAVY (calculated)

0.021

Length

259 amino acids

Sequence
(BLAST)

001: MAMAAVTGAV LSGLGSSFLS GGRRSITALG TGVGTGAARV GRKTLIVAAA AAQPKKSWIP AVKGGGNFLD PEWLDGSLPG DFGFDPLGLG KDPAFLKWYR
101: EAELIHGRWA MAAVLGIFVG QAWSGVPWFE AGADPRAIAP FSFGSLLGTQ LLLMGWVESK RWVDFFNPDS QSVEWATPWS RTAENFANYT GDQGYPGGRF
201: FDPLGLAGKT RDGVYEPDRE KLERLKLAEI KHSRLAMLAM LIFYFEAGQG KTPLGALGL

Best Arabidopsis Sequence Match ( AT1G15820.1 )
(BLAST)

001: MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE
101: AELIHGRWAM AAVLGIFVGQ AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK TAENFANYTG DQGYPGGRFF
201: DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML IFYFEAGQGK TPLGALGL

Arabidopsis Description

LHCB6Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q9LMQ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.