CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15020	Canola	plastid	94.51	88.93
CDY12903	Canola	plastid	93.73	88.19
CDY57375	Canola	plastid	93.33	87.82
CDY47581	Canola	plastid	93.73	87.55
CDY03835	Canola	plastid	93.73	87.55
AT1G61520.1	Thale cress	plastid	89.02	83.15
Solyc10g007690.2.1	Tomato	plastid	86.27	80.59
PGSC0003DMT400054836	Potato	plastid	85.88	80.22
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	29.8	80.0
PGSC0003DMT400020100	Potato	plastid	83.92	78.39
Bra038584.1-P	Field mustard	plastid	87.84	78.05
Solyc12g011280.1.1	Tomato	plastid	83.14	77.66
KXG20345	Sorghum	plastid	80.0	76.98
Zm00001d046786_P001	Maize	plastid	80.39	76.78
VIT_15s0024g00040.t01	Wine grape	plastid	81.96	76.28
KRH74072	Soybean	mitochondrion, nucleus, plastid	81.96	75.72
KRH14048	Soybean	nucleus, plastid	81.96	75.72
TraesCS6B01G191500.1	Wheat	plastid	77.25	73.23
TraesCS6D01G152700.1	Wheat	golgi	77.25	73.23
TraesCS6A01G159800.1	Wheat	plastid	77.25	73.23
Os02t0197600-01	Rice	plastid	76.47	72.49
CDY66572	Canola	cytosol, extracellular, plastid	23.14	41.26
CDY43936	Canola	plastid	38.43	38.28
CDY47410	Canola	plastid	37.65	38.1
CDX99044	Canola	plastid	37.65	38.1
CDX89120	Canola	plastid	38.04	37.89
CDY30369	Canola	plastid	22.35	37.5
CDY51572	Canola	plastid	38.04	37.45
CDY43213	Canola	mitochondrion, plastid	35.29	34.88
CDY17055	Canola	mitochondrion, plastid	35.29	34.88
CDY17250	Canola	mitochondrion, plastid	21.96	34.36
CDX83783	Canola	plastid	35.69	34.21
CDX96677	Canola	plastid	35.69	34.21
CDY14320	Canola	plastid	30.98	33.76
CDY18320	Canola	plastid	30.98	33.76
CDY52238	Canola	plastid	30.59	33.33
CDX67613	Canola	plastid	31.37	33.2
CDX78277	Canola	plastid	31.37	33.2
CDY07517	Canola	plastid	31.37	33.2
CDX73435	Canola	plastid	31.37	33.2
CDY15050	Canola	plastid	32.16	30.94
CDX90755	Canola	plastid	33.73	30.71
CDY05098	Canola	plastid	33.73	30.71
CDY60092	Canola	plastid	33.73	30.61
CDX93077	Canola	plastid	31.76	30.57
CDX84316	Canola	plastid	31.76	30.45
CDX84647	Canola	plastid	31.76	30.45
CDX79562	Canola	plastid	31.76	30.45
CDY17247	Canola	plastid	31.76	30.45
CDX83967	Canola	extracellular, vacuole	2.75	30.43
CDX98158	Canola	plastid	31.76	30.34
CDY43198	Canola	plastid	31.76	30.34
CDY20039	Canola	plastid	31.37	30.19
CDY49770	Canola	plastid	31.37	30.08
CDY17248	Canola	plastid	31.37	30.08
CDY13732	Canola	plastid	31.37	30.08
CDY03989	Canola	plastid	31.37	30.08
CDY00149	Canola	plastid	31.37	30.08
CDX83726	Canola	plastid	31.37	30.08
CDY43676	Canola	plastid	31.37	29.96
CDY35271	Canola	plastid	31.37	29.96
CDY26306	Canola	plastid	31.37	29.96
CDX99866	Canola	plastid	31.37	29.96
CDX90218	Canola	plastid	31.37	29.96
CDY66768	Canola	plastid	31.37	29.96
CDY33376	Canola	plastid	27.84	27.52
CDX81735	Canola	plastid	27.84	27.41
CDY35042	Canola	plastid	27.45	27.13
CDY52865	Canola	plastid	27.45	27.03
CDY28778	Canola	plastid	27.06	26.95
CDX96833	Canola	plastid	27.06	26.64
CDY04834	Canola	plastid	29.8	26.48
CDY44667	Canola	plastid	29.8	26.39
CDY53084	Canola	plastid	29.8	26.3
CDY20518	Canola	plastid	26.67	24.64
CDX86864	Canola	plastid	20.0	24.4
CDX84315	Canola	plastid	31.37	24.32
CDX74808	Canola	plastid	25.88	23.91
CDX83966	Canola	plastid	20.78	23.25
CDY45980	Canola	plastid	29.41	23.15
CDY20401	Canola	plastid	29.41	22.94
CDY61708	Canola	plastid	21.18	15.43

Protein Annotations

MapMan:1.1.4.1.3	Gene3D:1.10.3460.10	GO:A0A078GMA7	UniProt:A0A078GMA7	EnsemblPlants:CDY26347	ProteinID:CDY26347
ProteinID:CDY26347.1	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00035089001	InterPro:IPR023329
PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF14	SUPFAM:SSF103511	TMHMM:TMhelix	UniParc:UPI0004EDFA0A
SEG:seg	:	:	:	:	:

Description

BnaA03g60230DChlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A078GMA7]

Coordinates

chrLK032188:+:413093..414384

Molecular Weight (calculated)

27806.5 Da

IEP (calculated)

8.375

GRAVY (calculated)

-0.085

Length

255 amino acids

Sequence
(BLAST)

001: MDRTDIRLKT AVSVRKTSFV VKAASTPPVK QGANRQLWFA SSQSLSYLDG SLPGDFGFDP LGLSDPEGTG GFIEPRWLAY GEIINGRFAM LGAAGTIAPE
101: ILGKVGLIPA DTALPWFQTC LIPPAGTYSY WADPYTRFVL EMALMGFAEH RRLQDWYNPG SMGKQYFLGL EKGFAGSGDP AYPGGPFFNP LGFGKDEKSM
201: KELKLKEVKN GRLAMLAILG YFVQGLVTGV GPYQNLLDHL ADPVNNNVLT SLKFH

Best Arabidopsis Sequence Match ( AT1G45474.1 )
(BLAST)

001: MAVVLRGGIT GGFLHHRRDA SSVITRRISS VKAAGGGINP TVAVERATWL PGLNPPPYLD GNLAGDYGFD PLGLGEDPES LKWYVQAELV HSRFAMLGVA
101: GILFTDLLRT TGIRNLPVWY EAGAVKFDFA STKTLIVVQF LLMGFAETKR YMDFVSPGSQ AKEGSFFFGL EAALEGLEPG YPGGPLLNPL GLAKDVQNAH
201: DWKLKEIKNG RLAMMAMLGF FVQASVTHTG PIDNLVEHLS NPWHKTIIQT LFTSTS

Arabidopsis Description

LHCA5Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C639]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.