CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74072	Soybean	mitochondrion, nucleus, plastid	99.64	99.64
VIT_15s0024g00040.t01	Wine grape	plastid	88.04	88.69
PGSC0003DMT400054836	Potato	plastid	86.23	87.18
PGSC0003DMT400020100	Potato	plastid	85.87	86.81
Solyc12g011280.1.1	Tomato	plastid	85.87	86.81
Solyc10g007690.2.1	Tomato	plastid	85.51	86.45
AT1G61520.1	Thale cress	plastid	84.42	85.35
CDY12903	Canola	plastid	83.33	84.87
Bra027083.1-P	Field mustard	plastid	82.97	84.5
CDY57375	Canola	plastid	82.97	84.5
CDY15020	Canola	plastid	82.61	84.13
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	28.62	83.16
CDY47581	Canola	plastid	82.25	83.15
CDY03835	Canola	plastid	82.25	83.15
Bra031427.1-P	Field mustard	plastid	81.88	82.78
CDY26347	Canola	plastid	75.72	81.96
Zm00001d046786_P001	Maize	plastid	78.62	81.27
KXG20345	Sorghum	plastid	75.72	78.87
Os02t0197600-01	Rice	plastid	76.81	78.81
TraesCS6D01G152700.1	Wheat	golgi	73.19	75.09
TraesCS6B01G191500.1	Wheat	plastid	73.19	75.09
TraesCS6A01G159800.1	Wheat	plastid	73.19	75.09
Bra038584.1-P	Field mustard	plastid	72.83	70.03
KRH12566	Soybean	plastid	38.77	41.15
KRH37524	Soybean	plastid	38.41	40.77
KRH63318	Soybean	plastid	36.59	40.08
KRH54568	Soybean	nucleus, plastid	36.59	40.08
KRH06319	Soybean	nucleus, plastid	38.77	39.63
KRH08634	Soybean	endoplasmic reticulum	17.75	39.52
KRH47742	Soybean	nucleus	37.68	36.88
KRH08384	Soybean	nucleus, plastid	32.25	36.18
KRH70044	Soybean	mitochondrion, nucleus, plastid	32.25	36.18
KRH51989	Soybean	nucleus	36.96	35.79
KRH08672	Soybean	mitochondrion, nucleus, plastid	34.06	35.61
KRH08669	Soybean	nucleus, plastid	34.06	35.61
KRH08676	Soybean	nucleus, plastid	34.06	35.61
KRH22164	Soybean	nucleus, plastid	34.06	35.21
KRH27171	Soybean	mitochondrion, nucleus, plastid	34.06	35.07
KRH42317	Soybean	mitochondrion, nucleus, plastid	32.97	34.6
KRH70280	Soybean	plastid	31.16	34.54
KRH74003	Soybean	nucleus, plastid	32.61	33.96
KRH14122	Soybean	nucleus, plastid	32.61	33.96
KRH58441	Soybean	mitochondrion, plastid	32.25	33.84
KRH68993	Soybean	plastid	37.68	33.77
KRH34336	Soybean	plastid	32.61	31.36
KRH58296	Soybean	plastid	27.54	31.28
KRG92462	Soybean	nucleus, plastid	32.61	31.25
KRH09238	Soybean	mitochondrion, nucleus, plastid	32.61	31.14
KRH38736	Soybean	nucleus, plastid	32.61	30.93
KRH10515	Soybean	mitochondrion, nucleus, plastid	28.26	30.0
KRH42185	Soybean	mitochondrion, nucleus, plastid	27.9	29.84
KRH43915	Soybean	mitochondrion, nucleus, plastid	27.9	29.5
KRH06016	Soybean	plastid	34.06	28.31
KRH75874	Soybean	mitochondrion, nucleus, plastid	29.71	28.28
KRH65776	Soybean	nucleus, plastid	29.35	27.93
KRH17548	Soybean	cytosol, peroxisome, plastid	19.57	26.73
KRG97750	Soybean	plastid	26.81	26.62
KRH31130	Soybean	nucleus, plastid	27.17	26.6
KRH61286	Soybean	mitochondrion	21.01	26.48
KRH58809	Soybean	mitochondrion	22.83	19.87

Protein Annotations

MapMan:1.1.4.1.3	Gene3D:1.10.3460.10	EntrezGene:100784090	EMBL:ACUP02008492	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind
InterPro:Chlorophyll_a/b-bd_dom_sf	EnsemblPlantsGene:GLYMA_14G003400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009416	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009765	GO:GO:0009768	GO:GO:0009941	GO:GO:0009987
GO:GO:0010287	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0031409	UniProt:I1M657	InterPro:IPR023329	EnsemblPlants:KRH14048	ProteinID:KRH14048
ProteinID:KRH14048.1	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF14	SUPFAM:SSF103511	UniParc:UPI000233B879
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:317498..319208

Molecular Weight (calculated)

29810.8 Da

IEP (calculated)

9.079

GRAVY (calculated)

-0.076

Length

276 amino acids

Sequence
(BLAST)

001: MAAQALVSSS SLTFSAEATR QSLGPRSLQS PFGFSRKASF LVKAAATPPV KQGSDRPLWF ASKQSLSYLD GSLPGDYGFD PLGLSDPEGT GGFIEPKWLA
101: YGEIINGRYA MLGAVGAIAP EILGKAGLIP QETALPWFRT GVFPPAGTYN YWADSYTLFV FEMALMGFAE HRRFQDWAKP GSMGKQYFLG LEKGLGGSGE
201: PAYPGGPFFN PLGFGKDEKS LKDLKLKEVK NGRLAMLAIL GYFVQALVTG VGPYQNLLDH LADPVHNNIL TSLKFH

Best Arabidopsis Sequence Match ( AT1G61520.1 )
(BLAST)

001: MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH

Arabidopsis Description

LHCA3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.