Factsheet for Bra031427.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03835	Canola	plastid	99.27	99.27
Bra027083.1-P	Field mustard	plastid	95.6	96.31
AT1G61520.1	Thale cress	plastid	93.04	93.04
Solyc10g007690.2.1	Tomato	plastid	86.08	86.08
PGSC0003DMT400020100	Potato	plastid	85.71	85.71
PGSC0003DMT400054836	Potato	plastid	85.71	85.71
VIT_15s0024g00040.t01	Wine grape	plastid	84.62	84.31
Solyc12g011280.1.1	Tomato	plastid	84.25	84.25
KRH74072	Soybean	mitochondrion, nucleus, plastid	83.15	82.25
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	28.57	82.11
Zm00001d046786_P001	Maize	plastid	80.22	82.02
KRH14048	Soybean	nucleus, plastid	82.78	81.88
KXG20345	Sorghum	plastid	79.12	81.51
Bra038584.1-P	Field mustard	plastid	82.42	78.4
Os02t0197600-01	Rice	plastid	76.19	77.32
TraesCS6B01G191500.1	Wheat	plastid	75.82	76.95
TraesCS6D01G152700.1	Wheat	golgi	75.82	76.95
TraesCS6A01G159800.1	Wheat	plastid	75.82	76.95
Bra014433.1-P	Field mustard	plastid	38.1	40.62
Bra003451.1-P	Field mustard	plastid	38.1	40.15
Bra018144.1-P	Field mustard	plastid	37.0	40.08
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	22.34	37.89
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	22.34	37.89
Bra014048.1-P	Field mustard	mitochondrion, plastid	34.8	36.82
Bra016522.1-P	Field mustard	plastid	35.53	36.47
Bra007109.1-P	Field mustard	plastid	30.77	34.85
Bra003198.1-P	Field mustard	plastid	30.77	34.85
Bra002999.1-P	Field mustard	plastid	32.6	33.58
Bra022976.1-P	Field mustard	plastid	32.23	33.08
Bra030182.1-P	Field mustard	plastid	32.23	32.96
Bra005425.1-P	Field mustard	plastid	31.87	32.71
Bra030181.1-P	Field mustard	plastid	31.87	32.58
Bra010807.1-P	Field mustard	plastid	31.87	32.58
Bra000708.1-P	Field mustard	plastid	33.33	32.5
Bra013183.1-P	Field mustard	plastid	31.5	32.45
Bra033022.1-P	Field mustard	plastid	30.4	32.17
Bra039070.1-P	Field mustard	plastid	30.77	31.7
Bra025297.1-P	Field mustard	plastid	30.77	31.58
Bra037913.1-P	Field mustard	plastid	32.23	31.32
Bra026099.1-P	Field mustard	plastid	28.57	30.23
Bra026745.1-P	Field mustard	plastid	28.21	29.73
Bra029732.1-P	Field mustard	plastid	30.4	28.82
Bra016650.1-P	Field mustard	plastid	27.11	28.79
Bra028906.1-P	Field mustard	plastid	30.04	28.47
Bra004989.1-P	Field mustard	plastid	27.11	26.81
Bra008265.1-P	Field mustard	plastid	30.4	25.62

Protein Annotations

MapMan:1.1.4.1.3	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra031427	EnsemblPlants:Bra031427.1	EnsemblPlants:Bra031427.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	UniProt:M4ERK1	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF14	SUPFAM:SSF103511	UniParc:UPI00025451EC	SEG:seg	:	:

Description

AT1G61520 (E=1e-138) LHCA3 | LHCA3; chlorophyll binding

Coordinates

chrA01:+:17546440..17547437

Molecular Weight (calculated)

29260.2 Da

IEP (calculated)

8.681

GRAVY (calculated)

0.014

Length

273 amino acids

Sequence
(BLAST)

001: MAAQALVSSS FTSSVQTARQ IFGVKPAVSV SQRKVSLVVK AASTPPAKQG ANRQLWFASS QSLSYLDGSL PGDFGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPADT ALPWFQTGVI PPAGTYSYWA DPYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GFAGSGDPAY
201: PGGPFFNPLG FGKDEKSMKE LKLKEVKNGR LAMLAILGYF VQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH

Best Arabidopsis Sequence Match ( AT1G61520.1 )
(BLAST)

001: MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH

Arabidopsis Description

LHCA3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.