Factsheet for Bra004989.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74808	Canola	plastid	100.0	100.0
AT2G40100.1	Thale cress	plastid	90.58	90.58
KRG97750	Soybean	plastid	75.0	74.46
KRH31130	Soybean	nucleus, plastid	74.64	73.05
Bra028906.1-P	Field mustard	plastid	69.93	67.01
Bra029732.1-P	Field mustard	plastid	68.48	65.62
Bra003198.1-P	Field mustard	plastid	32.97	37.76
Bra007109.1-P	Field mustard	plastid	32.97	37.76
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	20.29	34.78
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	19.93	34.16
Bra026745.1-P	Field mustard	plastid	31.88	33.98
Bra026099.1-P	Field mustard	plastid	31.16	33.33
Bra018144.1-P	Field mustard	plastid	30.43	33.33
Bra003451.1-P	Field mustard	plastid	31.16	33.2
Bra030181.1-P	Field mustard	plastid	31.88	32.96
Bra014433.1-P	Field mustard	plastid	30.43	32.81
Bra022976.1-P	Field mustard	plastid	31.52	32.71
Bra005425.1-P	Field mustard	plastid	31.52	32.71
Bra030182.1-P	Field mustard	plastid	31.52	32.58
Bra010807.1-P	Field mustard	plastid	31.16	32.21
Bra016650.1-P	Field mustard	plastid	29.35	31.52
Bra016522.1-P	Field mustard	plastid	30.07	31.2
Bra033022.1-P	Field mustard	plastid	27.9	29.84
Bra039070.1-P	Field mustard	plastid	27.9	29.06
Bra013183.1-P	Field mustard	plastid	27.9	29.06
Bra025297.1-P	Field mustard	plastid	27.9	28.95
Bra000708.1-P	Field mustard	plastid	29.35	28.93
Bra014048.1-P	Field mustard	mitochondrion, plastid	26.81	28.68
Bra037913.1-P	Field mustard	plastid	28.99	28.47
Bra002999.1-P	Field mustard	plastid	26.45	27.55
Bra027083.1-P	Field mustard	plastid	26.81	27.31
Bra031427.1-P	Field mustard	plastid	26.81	27.11
Bra008265.1-P	Field mustard	plastid	28.62	24.38
Bra038584.1-P	Field mustard	plastid	23.55	22.65

Protein Annotations

MapMan:1.1.1.1.2	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra004989	EnsemblPlants:Bra004989.1	EnsemblPlants:Bra004989.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009637	GO:GO:0009765	GO:GO:0009987	GO:GO:0010114
GO:GO:0010218	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	InterPro:IPR023329	UniProt:M4CLA2	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF32
SUPFAM:SSF103511	TMHMM:TMhelix	UniParc:UPI00025472EA	SEG:seg	:	:

Description

AT2G40100 (E=1e-133) LHCB4.3 | LHCB4.3 (light harvesting complex PSII); chlorophyll binding

Coordinates

chrA05:-:2840193..2841371

Molecular Weight (calculated)

30103.1 Da

IEP (calculated)

4.997

GRAVY (calculated)

-0.097

Length

276 amino acids

Sequence
(BLAST)

001: MATTTAAAAS GIFGIRIQDP SSGAGRVQAK FNFSFGKKKP APPPKKTKQV QNDGDRLVWF PGANPPEWLD GSMIGDRGFD PFGLGKPAEY LQYDFDGLDQ
101: NLAKNVAGEL LGVRQDSKEI NPTPFQPYTE VFGIERFREC ELIHGRWAML GVLGALAVEG LTGIAWQDAG KVELVEGSSY LGQPLPFSLT TLIWIEVLVV
201: GYIEFQRNAE LDPEKRIYPG GYFDPLGLAA DPEKLDTLKL AEIKHSRLAM IAFLIFGLQA AFTGKGPISF LATFSS

Best Arabidopsis Sequence Match ( AT2G40100.1 )
(BLAST)

001: MATTTAAAAS GIFGIRIQDP RPGTGRVQAR FGFSFGKKKP APPPKKSRQV QDDGDRLVWF PGANPPEWLD GSMIGDRGFD PFGLGKPAEY LQYDFDGLDQ
101: NLAKNVAGDI IGIIQESSEI KPTPFQPYTE VFGIQRFREC ELIHGRWAML GTLGAIAVEA LTGIAWQDAG KVELVEGSSY LGQPLPFSLT TLIWIEVLVV
201: GYIEFQRNSE LDPEKRIYPG GYFDPLGLAA DPEKLDTLKL AEIKHSRLAM VAFLIFALQA AFTGKGPVSF LATFNN

Arabidopsis Description

LHCB4.3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VTY4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.