Factsheet for Bra027083.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12903	Canola	plastid	99.26	99.26
CDY57375	Canola	plastid	98.89	98.89
Bra031427.1-P	Field mustard	plastid	96.31	95.6
AT1G61520.1	Thale cress	plastid	94.46	93.77
PGSC0003DMT400020100	Potato	plastid	86.35	85.71
VIT_15s0024g00040.t01	Wine grape	plastid	86.35	85.4
Solyc10g007690.2.1	Tomato	plastid	85.98	85.35
PGSC0003DMT400054836	Potato	plastid	85.61	84.98
Solyc12g011280.1.1	Tomato	plastid	85.61	84.98
KRH74072	Soybean	mitochondrion, nucleus, plastid	84.87	83.33
KRH14048	Soybean	nucleus, plastid	84.5	82.97
Zm00001d046786_P001	Maize	plastid	80.81	82.02
KXG20345	Sorghum	plastid	79.7	81.51
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	28.41	81.05
Bra038584.1-P	Field mustard	plastid	81.55	77.0
Os02t0197600-01	Rice	plastid	74.91	75.46
TraesCS6D01G152700.1	Wheat	golgi	74.54	75.09
TraesCS6B01G191500.1	Wheat	plastid	74.54	75.09
TraesCS6A01G159800.1	Wheat	plastid	74.54	75.09
Bra014433.1-P	Field mustard	plastid	38.38	40.62
Bra003451.1-P	Field mustard	plastid	38.38	40.15
Bra018144.1-P	Field mustard	plastid	37.27	40.08
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	22.51	37.89
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	22.51	37.89
Bra016522.1-P	Field mustard	plastid	35.79	36.47
Bra014048.1-P	Field mustard	mitochondrion, plastid	34.69	36.43
Bra007109.1-P	Field mustard	plastid	30.63	34.44
Bra003198.1-P	Field mustard	plastid	30.63	34.44
Bra002999.1-P	Field mustard	plastid	33.21	33.96
Bra022976.1-P	Field mustard	plastid	33.21	33.83
Bra005425.1-P	Field mustard	plastid	32.84	33.46
Bra030182.1-P	Field mustard	plastid	32.84	33.33
Bra030181.1-P	Field mustard	plastid	32.47	32.96
Bra010807.1-P	Field mustard	plastid	32.47	32.96
Bra000708.1-P	Field mustard	plastid	33.95	32.86
Bra033022.1-P	Field mustard	plastid	31.0	32.56
Bra013183.1-P	Field mustard	plastid	31.73	32.45
Bra039070.1-P	Field mustard	plastid	31.37	32.08
Bra025297.1-P	Field mustard	plastid	31.37	31.95
Bra037913.1-P	Field mustard	plastid	32.84	31.67
Bra029732.1-P	Field mustard	plastid	31.37	29.51
Bra028906.1-P	Field mustard	plastid	31.37	29.51
Bra026099.1-P	Field mustard	plastid	28.04	29.46
Bra026745.1-P	Field mustard	plastid	27.68	28.96
Bra016650.1-P	Field mustard	plastid	26.57	28.02
Bra004989.1-P	Field mustard	plastid	27.31	26.81
Bra008265.1-P	Field mustard	plastid	30.63	25.62

Protein Annotations

MapMan:1.1.4.1.3	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra027083	EnsemblPlants:Bra027083.1	EnsemblPlants:Bra027083.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009522	GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009765	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168
GO:GO:0018298	GO:GO:0019538	InterPro:IPR023329	UniProt:M4EE72	PFAM:PF00504	PANTHER:PTHR21649
PANTHER:PTHR21649:SF14	SUPFAM:SSF103511	UniParc:UPI00025425E5	SEG:seg	:	:

Description

AT1G61520 (E=5e-132) LHCA3 | LHCA3; chlorophyll binding

Coordinates

chrA09:-:8322787..8323798

Molecular Weight (calculated)

29115.0 Da

IEP (calculated)

8.664

GRAVY (calculated)

-0.005

Length

271 amino acids

Sequence
(BLAST)

001: MAAHALVSSS LTSSVQTARQ IFGTKPVVSV RKTSFVVKAA STPPVKQGAN RPLWFASSQS LSYLDGSLPG DYGFDPLGLS DPEGTGGFIE PRWLAYGEII
101: NGRFAMLGAA GAIAPEILGK AGLIPADTAL PWFQTGVIPP AGTYSYWADP YTLFVLEMAL MGFAEHRRLQ DWYNPGSMGK QYFLGLEKGF AGSGDPSYPG
201: GPFFNPLGFG KDEKSMKELK LKEVKNGRLA MLAILGYFVQ GLVTGVGPYQ NLLDHLADPV NNNVLTSLKF H

Best Arabidopsis Sequence Match ( AT1G61520.1 )
(BLAST)

001: MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE
101: IINGRFAMLG AAGAIAPEIL GKAGLIPAET ALPWFQTGVI PPAGTYTYWA DNYTLFVLEM ALMGFAEHRR LQDWYNPGSM GKQYFLGLEK GLAGSGNPAY
201: PGGPFFNPLG FGKDEKSLKE LKLKEVKNGR LAMLAILGYF IQGLVTGVGP YQNLLDHLAD PVNNNVLTSL KFH

Arabidopsis Description

LHCA3Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.