Factsheet for Bra002999.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14320	Canola	plastid	87.92	99.57
CDY18320	Canola	plastid	87.55	99.15
AT5G54270.1	Thale cress	plastid	96.98	96.98
VIT_19s0014g03660.t01	Wine grape	plastid	88.68	88.35
KRH27171	Soybean	mitochondrion, nucleus, plastid	89.06	88.06
KRH22164	Soybean	nucleus, plastid	88.68	88.02
PGSC0003DMT400049550	Potato	plastid	86.79	87.79
Solyc07g063600.2.1	Tomato	nucleus	86.79	87.79
Solyc12g011450.1.1	Tomato	plastid	87.55	87.55
PGSC0003DMT400022072	Potato	plastid	87.17	87.17
GSMUA_AchrUn_...	Banana	plastid	75.85	87.01
OQU90095	Sorghum	plastid	87.55	86.57
VIT_00s0181g00180.t01	Wine grape	plastid	87.55	86.25
Zm00001d021784_P001	Maize	plastid	87.17	85.87
VIT_00s0181g00200.t01	Wine grape	plastid	87.17	85.87
TraesCS1D01G428200.1	Wheat	plastid	85.66	84.7
TraesCS1B01G451100.1	Wheat	plastid	85.66	84.7
TraesCS2A01G204800.1	Wheat	plastid	85.66	84.7
GSMUA_Achr1P08770_001	Banana	plastid, unclear	75.85	83.4
Os07t0562700-01	Rice	extracellular, plastid	83.02	82.71
HORVU2Hr1G040780.7	Barley	plastid	83.77	81.62
Bra021909.1-P	Field mustard	cytosol, extracellular, plastid	46.79	77.02
Bra005424.1-P	Field mustard	cytosol, extracellular, plastid	46.79	77.02
Bra013183.1-P	Field mustard	plastid	69.06	69.06
Bra033022.1-P	Field mustard	plastid	67.17	68.99
Bra010807.1-P	Field mustard	plastid	69.06	68.54
Bra039070.1-P	Field mustard	plastid	68.3	68.3
Bra025297.1-P	Field mustard	plastid	68.3	68.05
Bra022976.1-P	Field mustard	plastid	68.3	68.05
Bra030182.1-P	Field mustard	plastid	68.3	67.79
Bra005425.1-P	Field mustard	plastid	67.92	67.67
Bra030181.1-P	Field mustard	plastid	67.92	67.42
Zm00001d006592_P001	Maize	plastid	27.55	59.35
Bra037913.1-P	Field mustard	plastid	41.13	38.79
Bra000708.1-P	Field mustard	plastid	40.0	37.86
Bra003198.1-P	Field mustard	plastid	32.08	35.27
Bra007109.1-P	Field mustard	plastid	32.08	35.27
Bra008265.1-P	Field mustard	plastid	40.75	33.33
Bra027083.1-P	Field mustard	plastid	33.96	33.21
Bra014433.1-P	Field mustard	plastid	31.7	32.81
Bra031427.1-P	Field mustard	plastid	33.58	32.6
Bra018144.1-P	Field mustard	plastid	30.57	32.14
Bra003451.1-P	Field mustard	plastid	31.32	32.05
Bra026099.1-P	Field mustard	plastid	29.81	30.62
Bra026745.1-P	Field mustard	plastid	29.81	30.5
Bra016650.1-P	Field mustard	plastid	29.43	30.35
Bra038584.1-P	Field mustard	plastid	32.45	29.97
Bra029732.1-P	Field mustard	plastid	32.45	29.86
Bra028906.1-P	Field mustard	plastid	32.08	29.51
Bra014048.1-P	Field mustard	mitochondrion, plastid	28.68	29.46
Bra016522.1-P	Field mustard	plastid	28.3	28.2
Bra004989.1-P	Field mustard	plastid	27.55	26.45

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EnsemblPlantsGene:Bra002999	EnsemblPlants:Bra002999.1	EnsemblPlants:Bra002999.1-P	InterPro:Chloro_AB-bd_pln
InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006464
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009522	GO:GO:0009523
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009635
GO:GO:0009644	GO:GO:0009719	GO:GO:0009737	GO:GO:0009765	GO:GO:0009769	GO:GO:0009987
GO:GO:0010119	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016168	GO:GO:0018298
GO:GO:0019538	GO:GO:0019904	GO:GO:0042651	InterPro:IPR023329	UniProt:M4CFL7	PFAM:PF00504
PANTHER:PTHR21649	PANTHER:PTHR21649:SF11	SUPFAM:SSF103511	UniParc:UPI0002543EB6	:	:

Description

AT5G54270 (E=1e-151) LHCB3, LHCB3*1 | LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3); structural molecule

Coordinates

chrA10:+:6156750..6157720

Molecular Weight (calculated)

28666.3 Da

IEP (calculated)

4.735

GRAVY (calculated)

0.040

Length

265 amino acids

Sequence
(BLAST)

001: MASTFMSSSS VLTPTPFLGQ TKGSTFNPLR DAVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGALGC ITPEVLQKWV RVDLKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FVPGA

Best Arabidopsis Sequence Match ( AT5G54270.1 )
(BLAST)

001: MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA

Arabidopsis Description

LHCB3Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.